Table 2.

Variant information extracted during the data collection process

Information	Note
Genome location	Genome location of the variant in both GRCh37 and GRCh38Strand information was also included
Reference SNP ID	Reference SNP ID of the variant
Reference allele	Reference allele of the variant
Alternative allele	Alternative allele of the variant
Raw P value	Raw P value given by the publication
Adjusted P value	If the publication did not provide adjusted P value, the method of Benjamini and Hochberg was conducted
Cutoff	The cutoff for the adjusted P valueIf the publication did not provide a cutoff, the cutoff was set to 0.05
Label	Given based on the cutoff for the adjusted P value provided in the publicationIf the adjusted P value was less than the cutoff, the label would be 1; otherwise, the label would be 0
Effect size	Effect size provided by the publication
Fragment effect	The effect of the fragment carrying the variant, given based on the effect size: activation, repression, or no effect
Experimental cell line	The cell line used to conduct the experiment
Genomic region	The genomic region in which the variant was located, such as the particular gene and intron
TF	TF related to the variant
TF effect	The effect of the aforementioned TF: activation or repression

Note: SNP, single nucleotide polymorphism; TF, transcription factor.