REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited data
EOC GWA Meta-analysis Summary Statistics	Ovarian Cancer Association Consortium Phelan et al.18	http://ocac.ccge.medschl.cam.ac.uk/
Endometrial eQTL summary statistics	Fung et al.39	http://reproductivegenomics.com.au/shiny/endo_eqtl_rna/
	Mortlock et al.35	http://reproductivegenomics.com.au/shiny/eeqtl2/
eQTLGen Blood eQTLs summary statistics	Võsa et al.40	https://www.eqtlgen.org/
GTEx eQTL summary statistics	Consortium et al.36	https://www.gtexportal.org/home/
H3K27ac ChIP-seq data	Corona et al.33	GEO:GSE68104
	Coetzee et al.34	GEO:GSE121103
	This study	GEO:GSE197928
ATAC-seq data	This study	GEO:GSE197928
Single-cell RNA-seq	Wang et al.42	GEO:GSE111976
Software and algorithms
LDSC	Bulik-Sullivan et al.20	https://github.com/bulik/ldsc
HDL	Ning et al.21	https://github.com/zhenin/HDL
Mendelian Randomization (MR)	R package MendelianRandomization version 0.5.0	https://cran.r-project.org/web/packages/MendelianRandomization/index.html
MR-PRESSO	Verbanck et al.26	https://github.com/rondolab/MR-PRESSO
MetABF	Trochet et al.27	https://github.com/trochet/metabf
RE2C	Lee et al.29	https://github.com/cuelee/RE2C
GWAS-pw	Pickrell et al.30	https://github.com/joepickrell/gwas-pw
fastBAT	GCTA	https://cnsgenomics.com/software/gcta/#Overview
	Bakshi et al.31
Over-representation analysis	WebGestalt	http://www.webgestalt.org/
	Liao et al.32
GENE2FUNC	FUMA	https://fuma.ctglab.nl/
	Watanabe et al.37
Peak Calling	ENCODE pipeline (v1.2.2)	https://www.encodeproject.org/pipelines/
Summary-data-based Mendelian Randomization (SMR)	Zhu et al.38	https://cnsgenomics.com/software/smr/#Overview
ComplexHeatmap	Gu et al.83	https://bioconductor.org/packages/release/bioc/html/ComplexHeatmap.html
Other
Endometriosis GWA Meta-analysis Summary Statistics	International Endometriosis Genetics Consortium	N/A
	Sapkota et al.17