Table 2.
Top 15 GO biological processes ordered by combined score after selecting differentially expressed genes using the Multi-Condition Setting (p < 0.01). GO IDs are linked to descriptions of the biological processes in the QuickGO web browser.
| GO Biological Process | p-value | c-score |
|---|---|---|
| cellular response to type I interferon (GO:0071357) | 2.35E-10 | 324.03 |
| type I interferon signaling pathway (GO:0060337) | 2.35E-10 | 324.03 |
| cytokine-mediated signaling pathway (GO:0019221) | 3.80E-26 | 319.38 |
| protein mono-ADP-ribosylation (GO:0140289) | 3.22E-04 | 319.17 |
| receptor signaling pathway via STAT (GO:0097696) | 2.73E-06 | 299.82 |
| receptor signaling pathway via JAK-STAT (GO:0007259) | 2.50E-06 | 250.15 |
| exogenous peptide antigen, TAP-independent (GO:0002480) | 7.04E-03 | 219.44 |
| negative regulation of bone remodeling (GO:0046851) | 2.62E-03 | 212.68 |
| interferon-gamma-mediated signaling pathway (GO:0060333) | 3.48E-08 | 211.38 |
| cellular response to interferon-gamma (GO:0071346) | 5.98E-10 | 192.56 |
| cellular response to cytokine stimulus (GO:0071345) | 6.64E-16 | 177.02 |
| negative regulation of bone resorption (GO:0045779) | 9.92E-03 | 164.52 |
| positive regulation of tyrosine phosphorylation of STAT protein (GO:0042531) | 1.39E-06 | 163.05 |
| negative regulation of viral genome replication (GO:0045071) | 2.50E-06 | 159.30 |
| positive regulation of defense response (GO:0031349) | 6.15E-08 | 155.70 |