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. 2021 Sep 1;11(47):29267–29286. doi: 10.1039/d1ra05268c

3D pictures representing the binding interactions and positioning of the tested natural compounds (1–6) inside both S and Mpro pockets of the SARS-CoV-2, besides the N3 inhibitor of Mpro (redocked, 7)a.

Comp. Pocket 3D interactions 3D protein positioning
1 S graphic file with name d1ra05268c-u1.jpg graphic file with name d1ra05268c-u2.jpg
Mpro graphic file with name d1ra05268c-u3.jpg graphic file with name d1ra05268c-u4.jpg
2 S graphic file with name d1ra05268c-u5.jpg graphic file with name d1ra05268c-u6.jpg
Mpro graphic file with name d1ra05268c-u7.jpg graphic file with name d1ra05268c-u8.jpg
3 S graphic file with name d1ra05268c-u9.jpg graphic file with name d1ra05268c-u10.jpg
Mpro graphic file with name d1ra05268c-u11.jpg graphic file with name d1ra05268c-u12.jpg
4 S graphic file with name d1ra05268c-u13.jpg graphic file with name d1ra05268c-u14.jpg
Mpro graphic file with name d1ra05268c-u15.jpg graphic file with name d1ra05268c-u16.jpg
5 S graphic file with name d1ra05268c-u17.jpg graphic file with name d1ra05268c-u18.jpg
Mpro graphic file with name d1ra05268c-u19.jpg graphic file with name d1ra05268c-u20.jpg
6 S graphic file with name d1ra05268c-u21.jpg graphic file with name d1ra05268c-u22.jpg
Mpro graphic file with name d1ra05268c-u23.jpg graphic file with name d1ra05268c-u24.jpg
N3, 7 Mpro graphic file with name d1ra05268c-u25.jpg graphic file with name d1ra05268c-u26.jpg
a

H-bonds were represented by red dashed lines while H-pi bonds by black ones.