TABLE 1.

Transposon-insertion sequencing statistics before TTR normalization

Replicate	Sequencing yield	No. of Tn end-containing reads	Replicon	Read count (no. of unique TA sites)	No. of TA hitsa	Insertion densityb	Median read count over non-zero TAc
T1	25,830,465	22,029,814	Chromosome	21,916,438	59,675	69.9	100.9
			pLM16734	1,262,371	1,205	88.5	62.6
T2	39,102,386	26,462,594	Chromosome	26,330,348	60,579	71.0	99.6
			pLM16734	956,994	1,196	87.9	65.6
P1	30,091,641	26,195,853	Chromosome	26,067,795	52,850	61.9	99.9
			pLM16734	1,227,568	979	71.9	77.3
P2	34,333,964	30,135,609	Chromosome	29,982,890	55,013	64.5	93.8
			pLM16734	1,236,398	1,052	77.3	70.05

^aThe X. hortorum pv. vitians LM16734 genome contains 85,314 chromosomal TA sites and 1,361 plasmidic TA sites.

^bInsertion density reflects the percentage of TA sites with at least one read mapped over the total number of TA sites on the replicon.

^cMean read count per TA site containing at least one read.