Skip to main content
. Author manuscript; available in PMC: 2022 Apr 26.
Published in final edited form as: Methods Enzymol. 2021 Apr 23;655:245–263. doi: 10.1016/bs.mie.2021.03.018

Fig. 5.

Fig. 5

Example code for running LABRAT’s calculatepsi function. Gencode’s genome annotation gff, the directories produced by runSalmon, a tab-delimited sampconds text file and defined conditions are required inputs. This code produces several output files within the current directory.