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List of structure variation in each subline.
| Category | Start position | End position | Len(bp) | Locus | SVs type | Encoded product |
| SVs in all sublines | 5253693 | 5254687 | 994 | PA4684/PA4685 | DEL | hypothetical protein |
| 789150 | 795774 | 6624 | PA0717-PA0727 | CNV | hypothetical protein of bacteriophage Pf1 | |
| SV in PAO1-C only | 2808156 | 2816540 | 8384 | mexT/mexE/mexF/oprN/PA2496/PA2497/PA2498 | DEL | Resistance-Nodulation-Cell Division mutidrug efflux |
