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. 2021 Dec 16;2(4):194–203. doi: 10.1089/phage.2021.0008

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© Guillermo Rangel-Pineros et al. 2021; Published by Mary Ann Liebert, Inc.

This Open Access article is distributed under the terms of the Creative Commons Attribution Noncommercial License [CC-BY-NC] (http://creativecommons.org/licenses/by-nc/4.0/) which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and the source are cited.

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FIG. 3. — Searching phage clouds for a set of input query phages and user-defined intergenomic distance thresholds. A set of 79 phage genomes from the GenBank that were not included in the graph database were used for searching phage clouds using two different intergenomic distance thresholds, 0.15 (A, C) and 0.21 (B, D). (A, B) Show the result of searching clouds composed exclusively of GenBank phages, while the clouds in (C, D) include phages from all reference databases. (E) Illustrates some examples of query phages shown as singletons in (B), but captured within some of the clouds present in (D). Arrows in (B, C, D) point to the query nodes present in the clouds found in (E). Node colors indicate the database where the corresponding phages were collected from and their size is proportional to the phages' genome sizes.