Table 1.
List of Reference Databases Used for Building Our Graph Database
| Source | Sequence count | Date accessed | % targeted host | % country |
|---|---|---|---|---|
| GenBank | 17,062 | July 29, 2021 | 87.5 | 62.1 |
| GPD | 142,809 | January 1, 2021 | 23 | 92.7 |
| TARA Oceans | 195,728 | November 2, 2020 | 0 | 0 |
| GTDB prophages | 64,180 | July 17, 2020 | 98.6 | 0 |
| IMG/VR terrestrial | 45,364 | January 29, 2021 | 9.82 | 0 |
| PIGEON | 95,047 | June 5, 2021 | 0 | 0 |
| GVD | 15,330 | June 23, 2020 | 0 | 0 |
| CHVD | 42,142 | June 5, 2021 | 0 | 0 |
| Horse virome | 1640 | June 5, 2021 | 0 | 0 |
| MarineUKSouth | 9915 | June 5, 2021 | 0 | 0 |
| Slurry | 6633 | June 5, 2021 | 0 | 0 |
Data on the number of sequences provided by each database, the last date they were accessed, and the percentage of entries that have information on targeted hosts and countries of isolation/detection are provided.
CHVD, Cenote Human Virome Database; GPD, Gut Phage Database; GTDB, Genome Taxonomy Database; GVD, Gut Virome Database; IMG/VR, Integrated Microbial Genome/Virus; PIGEON, Phages and Integrated Genomes Encapsidated Or Not.