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. Author manuscript; available in PMC: 2023 Jan 13.
Published in final edited form as: Methods Enzymol. 2022 Jan 13;665:73–103. doi: 10.1016/bs.mie.2021.12.004

TABLE 2:

Steps for immobilization of MDP compounds

Step Biacore 3000 BI-4500
Mount the chip “Dock”: for docking the chip
“Prime”: for equilibrating the system with running buffer PBS at 5 μL/min
“Startup”: for cleaning the prism stage, mounting the chip, and purging the system with running buffer at 60 μL/min
Make a 1:1 EDC/NHS solution “Dilute”: to mix NHS solution with EDC solution “Add” and “Stir”: to add NHS solution to EDC-containing vial and mix well
Inject EDC/NHS to activate carboxylic acid groups to amine-reactive NHS-esters “Inject”: pass EDC/NHS solution through the gold chip for 7 minutes “Inject”: flow 200 μL of EDC/NHS solution over the chip
Wash with PBS to remove residual EDC/NHS “Inject”: add PBS for 2 mins “Inject”: to inject 200 μL of PBS
Coupling reaction between MDP containing an amino group and NHS-esters results in the formation of an amide bond. “Inject”: flow MDP solution over the chip for 7 minutes “Inject”: add 200 μL of MDP solution
Wash “Inject”: wash with PBS for 2 minutes “Inject”: to inject 200 μL of PBS
Deactivate unreacted carboxylic acid group with ethanolamine (EA) “Inject”: flow 1M EA solution over the chip for 7 minutes “Inject”: inject 200 μL of 1M EA
Wash with SDS “Inject”: flow SDS buffer over the chip for 3 minutes “Inject”: inject 200 μL of SDS buffer
Wash with PBS “Unclog”: flow PBS buffer over the chip to wash away all residues at a high flow rate “Inject”: inject 400 μL of PBS