Table 2.
Bacteria found in significantly different abundance in CRC, adenomas and controls in at least two studies.
Bacteria taxonomic level | Reported to be more abundant in: | |||||
---|---|---|---|---|---|---|
Phylum | Order/Famliy | Genus | Species | CRC | Adenomas | Controls |
Actinobacteria | [24] | [35] | [31] | |||
Bifidobacteriaceae | Bifidobacterium | [22, 38, 39, 48, 61, 62] | ||||
[Actinomycetaceae] | Actinomyces | [34, 36] | [35] | |||
[Coriobacteriaceae] | Atopobium | [34] | [36] | |||
Eggerthella lenta | [25, 51] | |||||
Bacteroidetes | [21, 24, 26, 48, 49] | [31, 37] | [24, 26, 37, 47] | |||
Porphyromonadaceae | Porphyromonas | [22, 26, 29] | [39] | |||
Porphyromonas asaccharolytica | [15, 25, 50, 59] | |||||
[Bacteroidaceae] | Bacteroides | [28, 29] | [23, 26] | |||
Bacteroides fragilis | [34] | [30, 39] | [61] | |||
[Prevotellaceae] | Prevotella | [28] | [23] | |||
Firmicutes | [26, 29, 48] | [35] | [21, 24, 26, 31, 35, 37, 47] | |||
Ruminococcaceae | Ruminococcus | [23, 38] | [29] | [48] | ||
Faecalibacterium | Faecalibacterium prausnitzii | [43] | [69] | |||
[Clostridiaceae] | Clostridium | [23] | [29] | |||
Clostridium symbiosum | [52, 58, 69] | [58] | ||||
Streptococcaceae | Streptococcus | [23, 26] | [35] | [24, 48] | ||
[Lachnospiraceae] | Coprococcus | [50] | [53] | [53] | ||
Lactobacillus | [28] | [39] | ||||
Roseburia | [23, 26, 39] | |||||
Roseburia faecis | [25, 51] | |||||
[Enterococcaceae] | Enterococcus | [26, 32] | ||||
Enterococcus faecalis | [46] | [30, 77] | ||||
[Peptostreptococcaceae] | Peptostreptococcus | [22, 23, 26, 36] | ||||
Peptostreptococcus stomatis | [15, 34, 52, 59] | |||||
[Acidaminococcaceae] | Phascolarctobacterium | [29] | [35] | [38] | ||
Fusobacteria | [29, 35, 38] | |||||
[Fusobacteriaceae] | Fusobacterium | [22, 23, 32, 34, 36, 50, 54, 67] | [36] | |||
Fusobacterium nucleatum | [15, 34, 43, 52–54, 58, 59, 75, 79] | [30, 58, 77, 81] | ||||
Tenericutes | [26] | [35] | [35] | |||
Alcaligenaceae | [22, 35] | [27] | ||||
Enterobacteriaceae | Salmonella | [27, 46] | [36] | |||
Escherichia coli | [43, 49] | |||||
[Pseudomonadaceae] | Pseudomonas | [61] | [29] |
Bacteria in square brackets were not reported on this level and are there for reference.
The number represents the corresponding order of the sited reference in the manuscript.