Antibodies |
|
Anti-B220 AlexaFluor700, Clone RA3-6B2 |
Biolegend |
Cat# 103232; RRID:AB_493717
|
Anti-Ly6G PE, Clone 1A8 |
Biolegend |
Cat# 127608; RRID:AB_1186099
|
Anti-CD69 BV711, Clone H1.2F3 |
Biolegend |
Cat# 104537; RRID:AB_2566120
|
Anti-GL7 AlexaFluor647 |
Biolegend |
Cat# 144606; RRID:AB_2562185
|
Anti-GL7 Pacific Blue |
Biolegend |
Cat# 144614; RRID:AB_2563292
|
Anti-GL7 PerCP/Cy5.5 |
Biolegend |
Cat# 144610; RRID:AB_2562979
|
Anti-PDL2 PeCy7, Clone B7-DC |
Biolegend |
Cat# 107214; RRID:AB_2728123
|
Anti-CD80 BV750, Clone B7-1 |
BD Biosciences |
Cat# 747436; RRID:AB_2872118
|
Anti-CD73 APC, Clone TY/11.8 |
Biolegend |
Cat# 127210; RRID:AB_11218786
|
Anti-CXCR3 BV605, Clone S18001A |
Biolegend |
Cat# 155915; RRID:AB_2892317
|
Anti-CD45 APC, Clone 30F11 |
Biolegend |
Cat# 103112; RRID:AB_312977
|
Anti-CD45.1 Pacific Blue,Clone A20 |
Biolegend |
Cat# 110722; RRID:AB_492866
|
Anti-CD45.2 Pacific Blue, Clone 104 |
Biolegend |
Cat# 109820; RRID:AB_492872
|
Anti-IgM PECy7, Clone RMM-1 |
Biolegend |
Cat# 406514; RRID:AB_10642031
|
Anti-IgG1 Biotin, Clone RMG1-1 |
Bioloegend |
Cat# 406604; RRID:AB_315063
|
Anti-IgG2b Biotin, Clone RMG2b-1 |
Biolegend |
Cat# 406704; RRID:AB_315067
|
Anti-IgG2a[b] Biotin, Clone 5.7 |
BD Biosciences |
Cat# 553504; RRID:AB_394889
|
Anti-IgA AlexaFluor647 |
Southern Biotech |
Cat# 1040-31; RRID:AB_2794377
|
InVivoMAb anti-mouse IFNg, Clone XMG1.2 |
BioXCell |
Cat# BE0055; RRID:AB_1107694
|
InVivoMAb anti-mouse CD40L, Clone MR-1 |
BioXCell |
Cat# BE0017-1; RRID:AB_1107601
|
InVivoMAb anti-mouse CXCR3, Clone CXCR3-173 |
BioXCell |
Cat# BE0249; RRID:AB_2687730
|
InVivoMAb rat IgG2a isotype control, anti-trinitrophenol |
BioXCell |
Cat# BE0089; RRID:AB_1107769
|
InVivoMAb Armenian Hamster IgG Isotype Control; anti GST, Clone PIP |
BioXCell |
Cat# BE0260; RRID:AB_2687739
|
TotalSeq™-C0914 anti-mouse CD273, Clone B7-DC |
Biolegend |
Cat# 107229; RRID:AB_2860615
|
TotalSeq™-C0015 anti-mouse Ly-6G,Clone 1A8 |
Biolegend |
Cat# 127657; RRID:AB_2819863
|
TotalSeq™-C0810 anti-mouse CD138, Clone 281-2 |
Biolegend |
Cat# 142538; RRID:AB_2860696
|
TotalSeq™-C0093 anti-mouse CD19, Clone 6D5 |
Biolegend |
Cat# 115571; RRID:AB_2832392
|
TotalSeq™-C0114 anti-mouse F4/80, Clone BM8 |
Biolegend |
Cat# 123157; RRID:AB_2832437
|
TotalSeq™-C0228 anti-mouse CXCR3, Clone CXCR3-173 |
Biolegend |
Cat# 126545; RRID:AB_2832454
|
TotalSeq™-C0197 anti-mouse CD69, Clone H1.2F3 |
Biolegend |
Cat# 104551; RRID:AB_2832333
|
TotalSeq™-C0120 anti-mouse TCR β chain, Clone H57-597 |
Biolegend |
Cat# 109259; RRID:AB_2819820
|
TotalSeq™-C0013 anti-mouse Ly-6C, Clone HK1.4 |
Biolegend |
Cat# 128051; RRID:AB_2832461
|
TotalSeq™-C0014 anti-mouse/human CD11b, Clone M1/70 |
Biolegend |
Cat# 101275; RRID:AB_2832272
|
TotalSeq™-C0117 anti-mouse I-A/I-E, Clone M5/114.15.2 |
Biolegend |
Cat# 107659; RRID:AB_2832368
|
TotalSeq™-C0112 anti-mouse CD62L, Clone MEL-14 |
Biolegend |
Cat# 104455; RRID:AB_2819800
|
TotalSeq™-C0106 anti-mouse CD11c, Clone N418 |
Biolegend |
Cat# 117361; RRID:AB_2819834
|
TotalSeq™-C0103 anti-mouse/human B220, Clone RA3-6B2 |
Biolegend |
Cat# 103273; RRID:AB_2832307
|
TotalSeq™-C0301 anti-mouse Hashtag 1, Clone M1/42; 30-F11 |
Biolegend |
Cat# 155861; RRID:AB_2800693
|
TotalSeq™-C0302 anti-mouse Hashtag 2, Clone M1/42; 30-F11 |
Biolegend |
Cat# 155863; RRID:AB_2800694
|
TotalSeq™-C0303 anti-mouse Hashtag 3, Clone M1/42; 30-F11 |
Biolegend |
Cat# 155865; RRID:AB_2800695
|
Purified Goat anti-mouse IgG (minimal x-reactivity), Poly4053 |
Biolegend |
Cat# 405301; RRID:AB_315005
|
Purified anti-mouse Ig light chain κ Antibody, Clone RMK-12 |
Biolegend |
Cat# 407202; RRID:AB_345326
|
Mouse Anti-Hamster IgG Antibody, Clone MAH1.12 |
R and D Systems |
Cat# MAB011; RRID:AB_357352
|
IgG from Mouse Serum |
Sigma-Aldrich |
Cat# I5381; RRID:AB_1163670
|
|
Bacterial and virus strains |
|
X31 influenza; H3N2 strain |
Cloned and propagated in house |
N/A |
CFP-S-Flu; [S-eCFP/N1(PR8)].H1(PR8) |
Generated, cloned and propagated in house |
N/A |
GFP-S-Flu; [S-eGFP/N1(PR8)].H1(PR8) |
Provided by Alain Townsend, (Powell et al., 2012) |
N/A |
|
Chemicals, peptides, and recombinant proteins |
|
Pertussis Toxin Islet Activating Protein Salt-Free (PTX) |
Quadratech Diagnostics Ltd. |
Cat# 181 |
Clodronated liposomes (CLL) |
Liposoma BV |
Cat# CP-010-010 |
Control liposomes (PBS) |
Liposoma BV |
Cat# CP-010-010 |
Fixable Viability Dye e780 |
Life Technologies Ltd |
Cat# 65-0865-14 |
Fingolimod (FTY720) HCl |
Stratech |
Cat# S5002 |
Collagenase D |
Roche |
Cat# 11088858001 |
DNase I |
Merck |
Cat# DN25 |
RNase A |
Merck |
Cat# R4875 |
Ultra TMB-ELISA Substrate Solution |
Thermo Scientific |
Cat# 34028 |
Streptavidin-BV605 |
Biolegend |
Cat# 405229 |
Streptavidin-Horseradish Peroxidase |
Jackson ImmunoResearch |
Cat# 016-030-084; RRID: AB_2337238
|
Biotin-X-NHS |
Sigma-Aldrich |
Cat# 203188 |
|
Critical commercial assays |
|
Cytofix/Cytoperm W/GolgiPlug Kit |
BD Biosciences |
Cat# 555028, RRID:AB_2869013
|
MagniSort Mouse B cell Enrichment Kit |
Thermo Fisher Scientific |
Cat# 8804-6827-74, RRID:AB_2575267
|
|
Deposited data |
|
Murine bulk RNA-Seq: lung BRM (ivCD45- B220+ CD69+ GL7- dTomato+ HA+), splenic Bmem (B220+ CD38+ GL7- dTomato+ HA+) and splenic naïve B cell (B220+ CD38+ GL7- dTomato-) |
This paper |
Gene Expression Omnibus: GSE183135; (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE183135) |
Murine scRNA-Seq: Lung ivCD45- ex-vivo CD45+ cells; d0 resting, D1 X31 rechallenge and D1 X31 rechallenge+CLL treatment |
This paper |
Gene Expression Omnibus: GSE194058
|
|
Experimental models: Organisms/strains |
|
Mouse: Rosa26-tdTomato: B6.Cg-Gt(ROSA)26Sortm9(CAG-tdTomato)Hze/J |
Jackson Laboratory |
Cat# 007909; RRID:IMSR_JAX:007909 |
Mouse: BLIMP1-mVenus: Prdm1-mVenus |
Provided by M. Saitou, (Ohinata et al., 2008) |
Riken accession CDB0460T |
Mouse: AID-cre: B6.129P2-Aicdatm1(cre)Mnz/J |
Jackson Laboratory |
Cat# 007770; RRID:IMSR_JAX:007770 |
Mouse: CD19Cre/Cre: B6.129P2(C)-Cd19tm1(Cre)Cgn/J |
Jackson Laboratory |
Cat# 006785; RRID:IMSR_JAX:006785 |
Mouse: Rosa26-stop-YFP: B6.129X1-Gt(ROSA)26Sortm1(EYFP)Cos/J |
Jackson Laboratory |
Cat# 006148; RRID:IMSR_JAX:006148 |
Mouse: Ub-GFP: C57BL/6-Tg(UBC-GFP)30Scha/J |
Jackson Laboratory |
Cat# 004353; RRID:IMSR_JAX:004353 |
|
Oligonucleotides |
|
TaqMan Gene Expression Assay. Mm00434946_m1 Cxcl9, FAM-MGB |
Life Technologies Ltd |
Cat# 4331182 |
TaqMan Gene Expression Assay. Mm00445235_m1 Cxcl10 |
Life Technologies Ltd |
Cat# 4331182 |
TaqMan Gene Expression Assay. Mm00441259_g1 Ccl3 |
Life Technologies Ltd |
Cat# 4331182 |
TaqMan Gene Expression Assay. Mm01302427_m1 Ccl5 |
Life Technologies Ltd |
Cat# 4331182 |
TaqMan Gene Expression Assay. Mm00443111 Ccl4 |
Life Technologies Ltd |
Cat# 4331182 |
TaqMan Gene Expression Assay. Mm99999915_g1 Gapdh gene |
Life Technologies Ltd |
Cat# 4331182 |
|
Software and algorithms |
|
Flowjo, v10.8, Treestar Inc. |
https://www.flowjo.com/ |
RRID: SCR_008520
|
Graphpad Prism v9 |
https://www.graphpad.com/scientificsoftware/ |
RRID: SCR_002798
|
Adobe Illustrator CS6 |
http://www.adobe.com/products/ illustrator.html |
RRID: SCR_010279
|
Imaris v9.2.1 |
http://www.bitplane.com/imaris/imaris |
RRID: SCR_007370
|
Zen Digital Imaging for Light Microscopy |
http://www.zeiss.com/microscopy/en_us/products/microscope-software/ |
RRID: SCR_013672
|
R Studio |
https://rstudio.com/ |
RRID:SCR_000432
|