TABLE 3.
Assembly-based confirmation of clade-specificitya
| Strain | AUS | CSS-1 | CSS-2 | CSS-3 | CSS-4 | Inferred clade status | Known clade status |
|---|---|---|---|---|---|---|---|
| BJCA002 | Y | N | N | Y | N | clade 3 | clade 3 |
| CAU924 | Y | Y | N | N | N | clade 1 | clade 1 |
| LOM | Y | N | N | Y | N | clade 3 | clade 3 |
| BJCA001 | Y | N | N | N | N | Not determined | clade 1 |
| A1 | Y | N | N | Y | N | clade 3 | clade 3 |
| JCM1448 | Y | N | Y | N | N | clade 2 | clade 2 |
| B11221 | Y | N | N | Y | N | clade 3 | clade 3 |
Y denotes presence of predicted PCR amplicon; N denotes its absence.