Skip to main content
. 2022 Mar 28;2(4):100192. doi: 10.1016/j.crmeth.2022.100192
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Antibodies and dyes for flow cytometry This paper (Table S2) N/A
CD16/CD32 Monoclonal Antibody, Clone 93 eBioScience Cat#14-0161-86
Human BD Fc Block BD Biosciences Cat#564220

Chemicals, peptides, and recombinant proteins

Lipopolysaccharides from Escherichia coli O55:B5 Sigma Aldrich Cat#L2637
Recombinant Murine IFN-γ Peprotech Cat#315-05
Recombinant Human IFN-γ Peprotech Cat# 300-02
Recombinant Murine IL-4 Peprotech Cat#214-14
Recombinant Human IL-4 Peprotech Cat# 300-02
Lymphoprep™ Stemcell technologies Cat#07861
Percoll™ Cytiva Cat#17-0891-01
Human M-CSF, research grade Miltenyi Cat#130-096-491
Phosphoric acid, 85 wt. % Sigma Aldrich Cat#345245
Sulfanilamide Sigma Aldrich Cat#S9251
N-(1-Naphtyl)ehtylene diamine dihydrochloride Sigma Aldrich Cat#N9125
Triton X-100 Sigma Aldrich Cat#X100
Tris(hydroxymethyl)aminomethane Sigma Aldrich Cat#1083821000
cOmplete™, Mini Protease Inhibitor Cocktail Roche Cat#11836153001
Manganese(II) chloride tetrahydrate Sigma Aldrich Cat#M5005
L-arginine Fluka Cat#11010
Sulfuric acid, 95.0-98.0% Fisher Scientific Cat#15642780
α-isonitrosopropriophenone Sigma Aldrich Cat#I3502
Glucose GOD-PAP Biolabo Cat#LP80209
meta-Phosphoric acid Sigma Aldrich Cat#239275
Glycine Sigma Aldrich Cat#15527
Hydrazine hydrate Sigma Aldrich Cat#225819
NAD+ (free acid) Cayman Chemicals Cat#16077
L-Lactate Dehydrogenase (L-LDH) Sigma Aldrich Cat#10127876001
Agilent Seahorse XF Base Medium Agilent Cat#102353-100
D-(+)-Glucose solution (45%) Sigma Aldrich Cat#G8769
Oligomycin Sigma Aldrich Cat#O4876
Carbonyl cyanide 4-(trifluoromethoxy)phenylhydrazone Sigma Aldrich Cat#C2920
Antimycin A Sigma Aldrich Cat#A8674
Rotenone Sigma Aldrich Cat#R8875
Hoechst 33342 Thermo Fisher Cat#H3570
Saponin Sigma Aldrich Cat#SAE0073
Lipofermata Cayman Chemicals Cat#25869
Phloretin Sigma Aldrich Cat#P7912

Critical commercial assays

SCENITH kit Arguello et al. (2020) http://www.scenith.com
Foxp3 / Transcription Factor Staining Buffer Set eBioScience Cat#00-5523-00
PM-M01 kit Biolog Cat#13101
Mito-S1 kit Biolog Cat#14105

Experimental models: Cell lines

LCM derived from L929 Cell Line from mouse Sigma Aldrich L929 cells: Cat#85011425-1VL

Experimental models: Organisms/strains

C57Bl/6J Charles River Strain #632
Buffy coats Sanquin Cat# E2824R00

Software and algorithms

Gen 5™ BioTek https://www.biotek.com/products/software-robotics-software/gen5-microplate-reader-and-imager-software/
Wave version 2.6.0.31 Agilent https://www.agilent.com/en/product/cell-analysis/real-time-cell-metabolic-analysis/xf-software/seahorse-wave-desktop-software-740897
Flow Jo v10 TreeStar https://www.flowjo.com
OMIQ OMIQ https://omiq.ai/
tSNE-CUDA Chan et al. (2019) https://github.com/CannyLab/tsne-cuda
Biolog Data Analysis Software version 1.7.1.58 Biolog https://www.biolog.com/
GraphPad Prism software version 8.2.1 GraphPad Software https://www.graphpad.com

Other

XF-96-cell culture plates and cartridges Agilent Cat#101085-004
RPMI 1640 Medium, no glucose Gibco Cat#11879020