Antibodies |
|
Antibodies and dyes for flow cytometry |
This paper (Table S2) |
N/A |
CD16/CD32 Monoclonal Antibody, Clone 93 |
eBioScience |
Cat#14-0161-86 |
Human BD Fc Block |
BD Biosciences |
Cat#564220 |
|
Chemicals, peptides, and recombinant proteins |
|
Lipopolysaccharides from Escherichia coli O55:B5 |
Sigma Aldrich |
Cat#L2637 |
Recombinant Murine IFN-γ |
Peprotech |
Cat#315-05 |
Recombinant Human IFN-γ |
Peprotech |
Cat# 300-02 |
Recombinant Murine IL-4 |
Peprotech |
Cat#214-14 |
Recombinant Human IL-4 |
Peprotech |
Cat# 300-02 |
Lymphoprep™ |
Stemcell technologies |
Cat#07861 |
Percoll™ |
Cytiva |
Cat#17-0891-01 |
Human M-CSF, research grade |
Miltenyi |
Cat#130-096-491 |
Phosphoric acid, 85 wt. % |
Sigma Aldrich |
Cat#345245 |
Sulfanilamide |
Sigma Aldrich |
Cat#S9251 |
N-(1-Naphtyl)ehtylene diamine dihydrochloride |
Sigma Aldrich |
Cat#N9125 |
Triton X-100 |
Sigma Aldrich |
Cat#X100 |
Tris(hydroxymethyl)aminomethane |
Sigma Aldrich |
Cat#1083821000 |
cOmplete™, Mini Protease Inhibitor Cocktail |
Roche |
Cat#11836153001 |
Manganese(II) chloride tetrahydrate |
Sigma Aldrich |
Cat#M5005 |
L-arginine |
Fluka |
Cat#11010 |
Sulfuric acid, 95.0-98.0% |
Fisher Scientific |
Cat#15642780 |
α-isonitrosopropriophenone |
Sigma Aldrich |
Cat#I3502 |
Glucose GOD-PAP |
Biolabo |
Cat#LP80209 |
meta-Phosphoric acid |
Sigma Aldrich |
Cat#239275 |
Glycine |
Sigma Aldrich |
Cat#15527 |
Hydrazine hydrate |
Sigma Aldrich |
Cat#225819 |
NAD+ (free acid) |
Cayman Chemicals |
Cat#16077 |
L-Lactate Dehydrogenase (L-LDH) |
Sigma Aldrich |
Cat#10127876001 |
Agilent Seahorse XF Base Medium |
Agilent |
Cat#102353-100 |
D-(+)-Glucose solution (45%) |
Sigma Aldrich |
Cat#G8769 |
Oligomycin |
Sigma Aldrich |
Cat#O4876 |
Carbonyl cyanide 4-(trifluoromethoxy)phenylhydrazone |
Sigma Aldrich |
Cat#C2920 |
Antimycin A |
Sigma Aldrich |
Cat#A8674 |
Rotenone |
Sigma Aldrich |
Cat#R8875 |
Hoechst 33342 |
Thermo Fisher |
Cat#H3570 |
Saponin |
Sigma Aldrich |
Cat#SAE0073 |
Lipofermata |
Cayman Chemicals |
Cat#25869 |
Phloretin |
Sigma Aldrich |
Cat#P7912 |
|
Critical commercial assays |
|
SCENITH kit |
Arguello et al. (2020) |
http://www.scenith.com |
Foxp3 / Transcription Factor Staining Buffer Set |
eBioScience |
Cat#00-5523-00 |
PM-M01 kit |
Biolog |
Cat#13101 |
Mito-S1 kit |
Biolog |
Cat#14105 |
|
Experimental models: Cell lines |
|
LCM derived from L929 Cell Line from mouse |
Sigma Aldrich |
L929 cells: Cat#85011425-1VL |
|
Experimental models: Organisms/strains |
|
C57Bl/6J |
Charles River |
Strain #632 |
Buffy coats |
Sanquin |
Cat# E2824R00 |
|
Software and algorithms |
|
Gen 5™ |
BioTek |
https://www.biotek.com/products/software-robotics-software/gen5-microplate-reader-and-imager-software/ |
Wave version 2.6.0.31 |
Agilent |
https://www.agilent.com/en/product/cell-analysis/real-time-cell-metabolic-analysis/xf-software/seahorse-wave-desktop-software-740897 |
Flow Jo v10 |
TreeStar |
https://www.flowjo.com |
OMIQ |
OMIQ |
https://omiq.ai/ |
tSNE-CUDA |
Chan et al. (2019) |
https://github.com/CannyLab/tsne-cuda |
Biolog Data Analysis Software version 1.7.1.58 |
Biolog |
https://www.biolog.com/ |
GraphPad Prism software version 8.2.1 |
GraphPad Software |
https://www.graphpad.com |
|
Other |
|
XF-96-cell culture plates and cartridges |
Agilent |
Cat#101085-004 |
RPMI 1640 Medium, no glucose |
Gibco |
Cat#11879020 |