Table 2.
Haplotype frequencies of the D614G group mutations in early samples from Europe.
Haplotype | Jan-01 2020 (0) | Jan-11 2020 (0) | Jan-21 2020 (1) | Jan-31 2020 (31) | Feb-10 2020 (32) | Feb-20 2020 (37) | Mar-01 2020 (592) | Mar-11 2020 (4049) | Mar-21 2020 (8323) | Mar-31 2020 (13 677) |
---|---|---|---|---|---|---|---|---|---|---|
CCCA (0000) | 0 | 0 | 0 | 23 | 19 | 18 | 234 | 1236 | 2432 | 3259 |
TTTG (1111) | 0 | 0 | 1 | 1 | 7 (9) | 18 | 344 | 2723 | 5741 | 10 184 |
vs. CCCA | 0.21 | 1.00 | 1.47 | 2.20 | 2.36 | 3.12 | ||||
Dw | 0.54 | 0.28 | 0.25 | 0.17 | 0.28 | AVG ∼ +0.30 | ||||
TTCG (1101) | 0 | 0 | 0 | 7 | 6 | 1 | 5 (6) | 7 | 4 | 7 (11) |
vs. CCCA | 0.30 | 0.32 | 0.024 | 0.0057 | 0.0019 | |||||
Dw | −0.84 | −1.03 | −0.85 | −0.55 | AVG ∼ −0.82 | |||||
TCTG (1011) | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 4 (6) | 9 | 11 |
vs. CCCA | 0.0041 | 0.0037 | 0.0034 | |||||||
Dw | −0.094 | −0.085 | AVG ∼ −0.090 | |||||||
CTTG (0111) | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 5 | 11 | 8 |
vs. CCCA | 0.0040 | 0.0045 | 0.0025 | |||||||
Dw | −0.24 | −0.59 | AVG ∼ −0.42 |
Table 2 is the counterpart of Table 1 in Europe with the additional information on the relative fitness of different haplotypes. Dw is the fitness advantage of the focus haplotype over DG0000 with the fitness defined by R in . Dw = RX − RY where X is for any haplotype X and RY is for DG0000. AVG is Dw averaged across time periods.