TABLE 1.
MRSA straina | Country of isolation | Yr of isolation | Coagulase isotypeb | Designation of probe(s) with positive hybridization
|
PCR result for localization of representative gene or structured
|
Reference | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
NCTC 10442 | N315 | 85/2082 | ccr gene typee | IS1272 | mecI | mecR1 PB/MS | mecA | MREP typingf | |||||
NCTC 10442 | United Kingdom | 1961 | 3 | 1–6 | 2, 3, 10 | 2–5 | 1 | + | − | −/+ | + | i | 32 |
61/6219 | United Kingdom | 1961 | 3 | 1–6 | 3, 4, 10 | 2–5 | 1 | + | − | −/+ | + | i | 32 |
64/3846 | United Kingdom | 1964 | 3 | 1–6 | 2–4, 10 | 2–5 | 1 | + | − | −/+ | + | i | 32 |
64/4176 | United Kingdom | 1964 | 3 | 1–6 | 1–3, 10 | 2–5 | 1 | + | − | −/+ | + | i | 32 |
86/4372(DNH) | United Kingdom | 1986 | 3 | 1 | 1–3, 10 | 2, 3, 5 | − | + | − | −/+ | + | ii | 32 |
KL3 | Malaysia | 1987 | 3 | 1–6 | 2–4, 10 | 2–5 | 1 | + | − | −/+ | + | i | 38 |
KL50 | Malaysia | 1989 | 4 | 1, 5 | 1–3 | 1–7 | 3 | − | + | +/+ | + | iii | 38 |
86/961 | United Kingdom | 1986 | 4 | None | 1–4 | 1–7 | 3 | − | + | +/+ | + | iii | 32 |
86/560 | United Kingdom | 1986 | 4 | None | 1–4 | 1–7 | 3 | − | + | +/+ | + | iii | 32 |
85/1340 | Yugoslavia | 1985 | 4 | None | 1–4 | 1–7 | 3 | − | + | +/+ | + | iii | 32 |
85/1762 | Hungary | 1985 | 4 | 1, 5 | 1–4 | 1–7 | 3 | − | + | +/+ | + | iii | 32 |
85/2082 | New Zealand | 1985 | 4 | 1, 5 | 1–4 | 1–7 | 3 | − | + | +/+ | + | iii | 32 |
85/2111 | Norway | 1985 | 4 | None | 1–4 | 1–7 | 3 | − | + | +/+ | + | iii | 32 |
85/1836 | Germany | 1985 | 4 | None | 1–4 | 1–7 | 3 | − | + | +/+ | + | iii | 32 |
85/2147 | Hong Kong | 1985 | 4 | None | 1–4 | 1–7 | 3 | − | + | +/+ | + | iii | 32 |
85/3907 | Germany | 1985 | 4 | None | 1–4 | 1–7 | 3 | − | + | +/+ | + | iii | 32 |
86/2652 | United Kingdom | 1986 | 4 | 1, 2, 4 | 1–4 | 1–7 | 3 | − | + | +/+ | + | iii | 32 |
85/5495 | Saudi Arabia | 1985 | 4 | None | 1–4 | 1–7 | 3 | − | + | +/+ | + | iii | 32 |
85/5328 | Portugal | 1985 | 4 | None | 1–4 | 1–7 | 3 | − | + | +/+ | + | − | 32 |
85/3619 | Austria | 1985 | 4 | 5 | 1–4 | 1–7 | 3 | − | + | +/+ | + | iii | 32 |
85/3566 | Holland | 1985 | 4 | None | 1–4 | 1–7 | 3 | − | + | +/+ | + | iii | 32 |
82/20-1 | Japan | 1982 | 2 | 1, 2, 5 | 1–10 | 1, 2, 4, 5 | 2 | − | + | +/+ | + | ii | 33 |
85/2235 | United States | 1985 | 2 | 5 | 1–10 | 1, 2, 4, 5 | 2 | − | + | +/+ | + | ii | 32 |
86/JO60 | Japan | 1985 | 2 | 1, 5 | 1–10 | 1, 2, 4, 5 | 2 | − | + | +/+ | + | ii | 32 |
86/BB5918 | Japan | 1986 | 2 | 1 | 1–10 | 1, 2, 4, 5 | 2 | − | + | +/+ | + | ii | 32 |
87/27 | Japan | 1987 | 2 | 1, 2, 5 | 1–10 | 1, 2, 4, 5 | 2 | − | + | +/+ | + | ii | 32 |
N315 | Japan | 1982 | 2 | None | 1–10 | 2 | 2 | − | + | +/+ | + | ii | 10 |
87/20 | Japan | 1987 | 2 | 1, 2, 5 | 1–10 | 1, 2, 4, 5 | 2 | − | + | +/+ | + | ii | 32 |
87/25 (DNH) | Japan | 1987 | 2 | 1, 5 | 1–4, 6–10 | 1, 2, 4, 5 | 2 | − | + | +/+ | + | ii | 32 |
84/9580 | South Africa | 1984 | 2 | 1–6 | 1–4, 10 | 2–5, 7 | 1 | + | − | −/+ | + | i | 32 |
86/9302 | United Kingdom | 1986 | 2 | 1–6 | 1–4, 10 | 2–5 | 1 | + | − | −/+ | + | i | 32 |
85/1774 | Italy | 1985 | 2 | 1–6 | 1–4, 10 | 2–5 | 1 | + | − | −/+ | + | i | 32 |
85/1940 | France | 1985 | 2 | 1–6 | 2, 3, 5 | 2–5 | 1 | + | − | −/+ | + | i | 32 |
85/4231 | Canada | 1985 | 4 | None | 1–10 | 2–5 | 2 | − | + | +/+ | + | ii | 32 |
85/2232 | United States | 1985 | 4 | None | 1–10 | 2–5 | 2 | − | + | +/+ | + | ii | 32 |
81/108 (DNH) | Japan | 1981 | 4 | 1, 5 | 2–4 | 2–5 | 2 | + | − | −/+ | + | ii | 12 |
93/H44 | Japan | 1993 | 4 | 1, 5 | 1–3 | 1–7 | 3 | − | + | +/+ | + | i | 11 |
85/4547 (DNH) | Israel | 1985 | 7 | 1, 3 | 3, 4 | 2, 5 | 2 | + | − | −/+ | + | ii | 32 |
DNH, strain whose chromosomal DNA did not typically hybridize to any of the three sets of the typing probes.
See the article by Ushioda et al. (34) for details of coagulase isotyping.
See Fig. 1 for the locations of the probes.
Localizations of the essential genes in SCCmec were estimated by PCR. The mecA gene and its regulator genes mecI and mecRI of both the penicillin-binding region (PB) and membrane spanning region (MS) are identified by using the primers described by Suzuki et al. (31). Localization of IS1272 in SCCmec was identified with the set of primers mA2, corresponding to the nucleotide sequence of the mecA gene, and iS-4, corresponding to the nucleotide sequence of IS1272 (2). A minus sign indicates that no DNA fragment was amplified by the set of primers described above.
The type of ccr complex was identified with PCR by combining primer β2, which was common to three ccrB genes, and three primers specific for each ccrA gene, α2(ccrA1), α3 (ccrA2), and α4 (ccrA3).
MREP typing is a method to amplify the right extremity region of SCCmec by using the primer sets bracketing the right SCCmec-chromosome junction point. The right PCR primer was cR4, and the left primers for each type of SCCmec were mR2 (types I and II) and mN16 (type III). For the locations of primers, see Fig. 1.