TABLE 2.

Effective population size (Ne) parameter based on linkage disequilibrium, considering 1633 SNPs

Sampling site	N	Ne	CI 95%	Jackknife CI	∆F
BR1	14	12.1	11.8–12.2	6.6–26.5	0.041
BR2	19	17.8	17.5–18.1	10.5–37.2	0.028
BR3	20	19.9	19.6–20.4	10.8–55.3	0.025
BR4	11	54.7	53.5–62.1	11.1–Inf.	0.009
BR5	15	15.1	15.1–15.8	8.2–40.5	0.033
BR6	18	26.5	25.8–27.1	13.7–95.2	0.018
BRGEN	15	9.8	9.7–10.0	3.6–28.3	0.051
COL1	19	14.0	13.6–14.0	9.5–21.6	0.036
COL2	14	34.8	32.6–35.6	15.6–640.2	0.014
COL3	16	46.9	45.2–49.0	21.0–Inf.	0.011
COL4	12	17.2	16.7–17.8	7.1–188.1	0.029
COL5	6	75.6	42.6–62.6	7.3–Inf.	0.006
PER	14	25.8	24.7–26.4	10.8–2164.4	0.019
WILD	6	Inf.	Inf.–Inf.	8.3–Inf.	Infinite

Abbreviations: CI, confidence interval 95%; inbreeding coefficient (∆F = 1 / 2Ne);Inf.: infinite; N, number of breeders for each fish farm.