TABLE 2.

Significantly enriched pathways of differentially expressed genes (DEGs) among HL and SW samples through KEGG enrichment analyses at bud infestation stages A, B, and C.

Pathway ID	Pathway	Number of annotated	Up-regulated	Down-regulated	q-Value (<0.05)
		log2 (fold-change) ≥ 1
HL_A vs SW_A
ko04075	Plant hormone signal transduction	120	79	41	8.65E-06
ko04016	MAPK signaling pathway	105	73	32	1.67E-02
ko03010	Ribosome	37	17	20	3.25E-03
ko03008	Ribosome biogenesis in eukaryotes	25	12	13	2.09E-05
ko04145	Phagosome	10	8	2	4.96E-02
ko00196	Photosynthesis - antenna proteins	9	9	0	4.92E-06
ko03050	Proteasome	8	1	7	2.45E-02
ko00590	Arachidonic acid metabolism	4	3	1	3.49E-02
ko00860	Porphyrin and chlorophyll metabolism	3	3	0	4.48E-06
ko00750	Vitamin B6 metabolism	3	1	2	4.56E-04
HL_B vs SW_B
ko04016	MAPK signaling pathway	55	28	27	0.005288
ko04075	Plant hormone signal transduction	36	22	14	0.019426
ko00511	Other glycan degradation	11	9	2	0.017392
ko03008	Ribosome biogenesis in eukaryotes	10	5	5	0.049904
ko04146	Peroxisome	6	4	2	0.049904
ko01212	Fatty acid metabolism	5	4	1	0.025405
ko01200	Carbon metabolism	5	1	4	0.017667
ko00051	Fructose and mannose metabolism	5	0	5	0.00222
ko00943	Isoflavonoid biosynthesis	4	2	2	0.005288
ko00860	Porphyrin and chlorophyll metabolism	3	2	1	0.000547
HL_C vs SW_C
ko04075	Plant hormone signal transduction	187	65	122	3.93E-08
ko04016	MAPK signaling pathway	179	104	75	2.70E-08
ko00511	Other glycan degradation	30	8	22	1.91E-02
ko03050	Proteasome	18	4	14	4.62E-06
ko00941	Flavonoid biosynthesis	17	11	6	5.48E-03
ko04146	Peroxisome	16	8	8	1.28E-05
ko00564	Glycerophospholipid metabolism	16	6	10	4.19E-04
ko00592	alpha-Linolenic acid metabolism	14	11	3	4.19E-04
ko00562	Inositol phosphate metabolism	14	5	9	7.40E-03
ko01212	Fatty acid metabolism	13	5	8	8.94E-03