Table 2.
Significant SNPs and odds ratio
| Gene refGene | rsId | HO_CI | HO_pvalues | HE_CI | HE_pvalues |
|---|---|---|---|---|---|
| GGTLC2;MIR650 | rs4050506 | 1.72–29.82 | 0.0006 | 0.01–0.55 | 0.0003 |
| GGTLC2;MIR650 | rs2904924 | 1.49–15.72 | 0.0027 | 0.01–0.65 | 0.0012 |
| APOL3 | rs132653 | 1.54–82.85 | 0.0012 | 0.01–0.65 | 0.0012 |
| APOL3 | rs132651 | 1.54–82.85 | 0.0012 | 0.01–0.67 | 0.0012 |
| APOL3 | rs4821460 | 1.5–80.84 | 0.0012 | 0.01–0.67 | 0.0012 |
| GGTLC2;MIR650 | rs4822280 | 1.36–6.72 | 0.0072 | 0.01–0.74 | 0.003 |
| GGTLC2;MIR650 | rs455194 | 1.65–28.64 | 0.001 | 0.04–0.62 | 0.001 |
| HPS4 | rs56782074 | 1.37–9.17 | 0.0138 | 0.34–0.92 | 0.0271 |
| TMEM211 | rs61643572 | 1.07–2.4 | 0.0282 | 0.37–0.84 | 0.0061 |
| TMEM211 | rs73879166 | 0.25–0.67 | 0.0005 | 1.49–4.03 | 0.0005 |
| EMID1 | rs2857463 | 0.07–0.81 | 0.0265 | 1.24–15.29 | 0.0265 |
| POM121L1P | rs6003123 | 1.18–2.62 | 0.0069 | 0.35–0.81 | 0.0038 |
| GGTLC2 | rs12484632 | 1.24–8 | 0.0122 | 0.09–0.74 | 0.004 |
| POM121L1P | rs3876045 | 1.12–5.1 | 0.0303 | 0.21–0.94 | 0.0428 |
| MYO18B | rs6004865 | 0.17–0.75 | 0.0079 | 1.14–2.52 | 0.0114 |
| APOL3 | rs132650 | 1.29–7.17 | 0.0123 | 0.11–0.71 | 0.0039 |
| PVALB | rs34262500 | 1.39–10.92 | 0.004 | 0.09–0.72 | 0.004 |
| APOL3 | rs35041494 | 1.16–3.96 | 0.0184 | 0.12–0.75 | 0.0057 |
| APOL4 | rs132718 | 1.04–11.27 | 0.0288 | 0.09–0.96 | 0.0288 |
| PRAMENP;VPREB1 | rs2330036 | 1.28–8.29 | 0.0083 | 0.1–0.78 | 0.0089 |
| CSF2RB;LL22NC01-81G9.3 | rs3950040 | 1.14–5.26 | 0.0329 | 0.38–0.95 | 0.0382 |
| MYO18B | rs2269635 | 1.1–2.44 | 0.0198 | 0.4–0.92 | 0.0254 |
| APOL3;APOL4 | rs132665 | 1.35–7.52 | 0.0084 | 0.13–0.74 | 0.0084 |
| LL22NC03-63E9.3;POM121L1P | rs964465 | 1.24–8 | 0.0122 | 0.13–0.84 | 0.012 |
| POM121L1P | rs3876046 | 1.02–2.35 | 0.0479 | 0.34–0.82 | 0.0061 |
| RORA | rs11430762 | 1.08–3.46 | 0.0324 | 0.3–0.96 | 0.0442 |
| LL22NC03-63E9.3;POM121L1P | rs457560 | 1.24–8 | 0.0122 | 0.13–0.86 | 0.0173 |
| LINC00895;SEPT5 | rs5746814 | 0.19–0.93 | 0.0405 | 1.15–2.53 | 0.0106 |
| LINC00895;SEPT5 | rs8143055 | 0.19–0.93 | 0.0405 | 1.13–2.49 | 0.0134 |
| NULL | rs62228082 | 1.21–7.85 | 0.0119 | 0.09–0.72 | 0.004 |
| CACNG2 | rs4821508 | 1.13–3.72 | 0.0254 | 0.35–0.84 | 0.0069 |
| GGTLC2;MIR650 | rs5759468 | 1.14–6.38 | 0.0296 | 0.16–0.88 | 0.0296 |
| APOL2 | rs132759 | 1.26–4.95 | 0.0103 | 0.18–0.76 | 0.0076 |
| CACNG2 | rs2013924 | 1.13–3.72 | 0.0254 | 0.38–0.89 | 0.0153 |
| SCARF2 | rs759609 | 1.07–2.52 | 0.0283 | 0.34–0.83 | 0.0075 |
| CACNG2 | rs4821506 | 1.07–3.9 | 0.0432 | 0.4–0.94 | 0.0325 |
| CACNG2 | rs2283981 | 1.13–3.72 | 0.0254 | 0.4–0.91 | 0.0217 |
| NULL | rs60580698 | 1.1–3.1 | 0.0254 | 0.34–0.97 | 0.047 |
| CES5AP1 | rs5751643 | 1.14–6.38 | 0.0296 | 0.17–0.93 | 0.0425 |
| GGTLC2;MIR650 | rs4820531 | 1.07–6.04 | 0.0425 | 0.17–0.93 | 0.0425 |
HO_CI, homozygous confidence interval; HE_CI, heterozygous confidence interval
P values are calculated from chi square test