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. 2021 Nov 30;1:52. doi: 10.1038/s43856-021-00053-9

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — Maximum-likelihood phylogenetic tree is based on 86493 core genome SNPs and rooted to midpoint. Black-filled circles, unfilled circles and red triangles on branch tips denote cBSI, CLABSI and IDU-BSI isolates, respectively. Isolate names are highlighted with colors denoting the multilocus sequence type (ST) identity of each isolate. Single and double-locus variant STs that exclusively share a common ancestor, are grouped in 16 ST groups. Outer rings denote an isolate’s antibiotic susceptibility according to electronic medical records (multicolored strip) and the presence/absence of attributable genetic determinants according to WGS (adjacent squares). Antibiotic and gene name labels are color coded according to pertinent antibiotic class. FOX, cefoxitin; CLI, clindamycin; ERY, erythromycin; SXT, trimethoprim/sulfamethoxazole; DOX, doxycycline. Figure metadata included in Supplementary Data 3.