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. 2020 Jun 1;10(35):20701–20712. doi: 10.1039/d0ra02297g

Node features (residue).

Number Feature Dimension
1 One-hot encoding of the residue symbol 21
2 Position-specific scoring matrix (PSSM) 21
3 Whether the residue is aliphatic 1
4 Whether the residue is aromatic 1
5 Whether the residue is polar neutral 1
6 Whether the residue is acidic charged 1
7 Whether the residue is basic charged 1
8 Residue weight 1
9 The negative of the logarithm of the dissociation constant for the –COOH group64 1
10 The negative of the logarithm of the dissociation constant for the –NH3 group64 1
11 The negative of the logarithm of the dissociation constant for any other group in the molecule64 1
12 The pH at the isoelectric point64 1
13 Hydrophobicity of residue (pH = 2)65 1
14 Hydrophobicity of residue (pH = 7)66 1
All 54