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. 2020 Jul 1;10(42):25089–25099. doi: 10.1039/d0ra04922k

Representative virtual screening studies to identify drug candidates for the treatment of COVID-19.

Target Experimental methods Libraries Compounds screened/outcome Ref.
Mpro Deep docking ZINC 15 1.3 billion/1,000a 9
Mpro Pharmacophore model, molecular docking, and dynamics Marine natural products 14 064/17a 10
Mpro Pharmacophore screening and molecular docking ZINC 50 000/10a 15
Spike protein Homology modeling and molecular docking FDA 3300/12a 18
Mpro, PLpro and RdRp Homology modeling, molecular docking, and dynamics DrugBank and traditional Chinese medicine 1973/57a 11
ACE2 Molecular docking Literature compilation (natural products) —/5a 12
Mpro Molecular docking Literature compilation (natural products) 80/8a 13
Mpro Molecular docking FDA 486/20a 19
Mpro Molecular docking, and dynamics ZINC 606 million/12a 20
Mpro Similarity search and QSAR modeling DrugBank (marketed, withdrawn, experimental, and investigational) 9615/41a 17
Mpro Molecular docking and dynamics DrugBank (approved and drug candidates in clinical trials) 2201/5a 21
Mpro and TMPRSS2 Homology modeling and molecular docking ZINC 34 500/8a 14
Mpro Induced fit docking In-house 10 000/6b 22
a

Computational hits.

b

Active hits.