The important thermodynamic parameters for best docking conformations of investigated molecules with SARS-CoV-2 (PDB ID: 6LU7).
Conformations | ΔGbind (kJ mol−1) | K i (nM) | ΔGHbond (kJ mol−1) | ΔGvdW (kJ mol−1) | ΔGdesolv (kJ mol−1) | ΔGintermol. energy (vdW+Hbond+desolv) (kJ mol−1) | ΔGelec (kJ mol−1) | ΔGtotal (kJ mol−1) | ΔGtor (kJ mol−1) | ΔGunb (kJ mol−1) | LE |
---|---|---|---|---|---|---|---|---|---|---|---|
6LU7-chloroquine | −36.40 | 629.1 | −4.47 | −45.96 | 8.17 | −42.26 | −0.16 | −3.97 | 10.00 | 0.00 | −1.61 |
6LU7-cinanserin | −38.36 | 256.8 | −2.32 | −47.81 | 7.51 | −42.62 | −0.25 | −5.48 | 10.00 | 0.00 | −1.57 |
6LU7-L1 | −37.70 | 338.1 | −3.37 | −42.85 | 8.54 | −37.68 | −0.31 | −3.43 | 3.72 | 0.00 | −1.76 |
6LU7-L2 | −39.95 | 153.8 | −2.21 | −46.52 | 9.99 | −38.74 | −0.38 | −3.35 | 2.51 | 0.00 | −1.77 |
6LU7-L3 | −39.12 | 190.6 | −2.34 | −46.55 | 9.60 | −39.29 | 0.34 | −3.89 | 3.72 | 0.00 | −1.74 |
6LU7-C1 | −45.13 | 17.94 | −0.20 | −47.63 | 8.79 | −39.04 | 0.18 | −8.79 | 2.51 | 0.00 | −1.03 |
6LU7-C2 | −50.49 | 2.33 | −0.25 | −53.86 | 10.29 | −43.81 | 0.02 | −9.20 | 2.51 | 0.00 | −1.10 |
6LU7-C3 | −47.03 | 7.55 | −0.09 | −49.15 | 9.54 | −39.70 | 0.33 | −10.17 | 2.51 | 0.00 | −1.03 |