Important thermodynamic parameters during 100 ns MD simulation generated with MM/PBSA protocol.
Complex | ΔEelec (kJ mol−1) | ΔEvdW (kJ mol−1) | ΔGpolar (kJ mol−1) | ΔGnonpolar (kJ mol−1) | ΔGbinding (kJ mol−1) |
---|---|---|---|---|---|
SARS-CoV-2 Mpro–C2 | −350.2 ± 0.90 | −163.4 ± 0.78 | 386.2 ± 0.79 | −22.2 ± 0.05 | −149.7 ± 0.63 |
SARS-CoV-2 Mpro–L2 | −27.4 ± 13.1 | −113.8 ± 17.3 | 91.5 ± 24.2 | −12.5 ± 1.7 | −62.1 ± 12.8 |
SARS-CoV-2 Mpro–cinanserin | −5.8 ± 0.27 | −89.7 ± 1.18 | 57.2 ± 1.09 | −11.5 ± 0.2 | −49.8 ± 1.04 |