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. 2020 Nov 10;10(67):40969–40982. doi: 10.1039/d0ra07526d

Atoms in molecules (AIM) analysis of consecutive DNAs and PNAs mediated with Hg2+ in canonical ATGC and TTTT mispair calculated at the B3LYP-D3/6-31G* level of theory in the aqueous phase.

DNA and PNA complexes with Hg2+ Critical points Density of all electrons Laplacian of electron density (∇2r) Total energy density H(r) Potential energy density V(r) Lagrangian kinetic energy G(r) |V(r)|/G(r)
DATGCD CP-193 0.04258 0.16492 −0.00205 −0.04098 0.03893 1.05
CP-233 0.06434 0.25514 −0.00898 −0.07227 0.06328 1.14
CP-246 0.05602 0.21314 −0.00601 −0.05824 0.05223 1.11
CP-248 0.05196 0.20745 −0.00462 −0.05469 0.05007 1.08
CP-211 0.00568 0.02040 0.00093 −0.00311 0.00404 0.77
CP-220 0.00485 0.02067 0.00069 −0.00378 0.00447 0.84
CP-256 0.00436 0.01389 0.00044 −0.00258 0.00302 0.85
CP-167 0.01890 0.05901 −0.00035 −0.01546 0.01510 1.02
CP-325 0.00392 0.01082 0.00046 −0.00178 0.00224 1.25
CP-318 0.03207 0.10872 0.00007 −0.02703 0.02710 0.99
CP-276 0.03122 0.10155 −0.00030 −0.02600 0.02569 1.01
DTTTTD CP-234 (Hg–Hg) 0.01577 0.08644 0.00255 −0.01485 0.01740 0.85
CP-208 (N–Hg) 0.06731 0.25994 −0.01017 −0.07498 0.06481 1.15
CP-239 (N–Hg) 0.06604 0.25571 0.00962 −0.07315 0.06352 1.10
CP-253 (N–Hg) 0.06718 0.26157 −0.01011 −0.07524 0.06513 1.15
CP-237 (N–Hg) 0.06599 0.25390 −0.00963 −0.07279 0.06316 1.15
CP-195 0.00500 0.01933 0.00101 −0.00271 0.00372 0.66
CP-241 0.00454 0.01469 0.00045 −0.00275 0.00321 0.66
CP-190 0.00463 0.01766 0.00094 −0.00252 0.00346 0.66
CP-254 0.00377 0.01185 0.00044 −0.00207 0.00251 1.00
CP-201 0.00679 0.02151 0.00110 −0.00317 0.00427 0.75
DTTTTP CP-175 (N–Hg) 0.06813 0.26470 −0.01050 −0.07651 0.06600 1.15
CP-180 (N–Hg) 0.06758 0.02622 −0.01025 −0.07554 0.06529 1.15
CP-235 (N–Hg) 0.29080 −0.01087 −0.30250 −0.03332 0.03069 1.08
CP-237 (N–Hg) 0.06716 0.26124 −0.01012 −0.07519 0.06506 1.15
CP-208 0.00473 0.01693 0.00081 −0.00252 0.00334 0.75
CP-205 0.00603 0.02115 0.00088 −0.00339 0.00427 0.82
CP-197 0.00453 0.01284 0.00045 −0.00229 0.00275 0.84
CP-162 0.00914 0.03121 0.00085 −0.00609 0.00694 1.00
CP-239 0.00575 0.01844 0.00071 −0.00317 0.00389 0.81
CP-256 0.02008 0.06815 0.00047 −0.01608 0.01655 0.97
PTTTTP CP-180 (N–Hg) 0.06599 0.25483 −0.00967 −0.07307 0.06340 1.15
CP-185 (N–Hg) 0.06621 0.25651 −0.00972 −0.07351 0.06378 1.15
CP-274 (N–Hg) 0.06673 0.25862 −0.00993 −0.07431 0.06437 1.15
CP-283 (N–Hg) 0.06556 0.25368 −0.00945 −0.07243 0.06298 1.16
CP-225 0.00616 0.02163 0.00089 −0.00348 0.00438 0.79
CP-230 0.00579 0.02036 0.00087 −0.00323 0.00410 0.78
CP-213 0.00297 0.00962 0.00046 −0.00146 0.00193 0.75
CP-246 0.00425 0.01219 0.00045 −0.00214 0.00259 0.82
CP-240 0.01010 0.03376 0.00076 −0.00691 0.00767 0.90