Skip to main content
. 2022 Mar 21;41(9):e110466. doi: 10.15252/embj.2021110466
Reagents or Tools Source Identifier
Antibodies
Rabbit Polyclonal Anti‐ACAT1 (WB) Sigma Cat# AV54278, RRID: AB_1844483
Mouse Monoclonal Anti‐ALCAM/CD166 (WB) Santa Cruz Biotechnolgy Cat# sc‐74558, RRID : AB_2289495
Mouse Monoclonal Anti‐ALCAM/CD166 (FACS) BD Biosciences Cat# 559260, RRID:AB_397209
Mouse Monoclonal Anti‐β‐Actin Sigma‐Aldrich Cat# A5316, RRID:AB_476743
Rabbit Polyclonal Anti‐BCAT1 Aviva Systems Biology Cat# ARP46132_P050, RRID:AB_10640125
Rabbit Polyclonal Anti‐BDH1 Novus Biologicals Cat# NBP1‐88673, RRID:AB_11009202
Rabbit Polyclonal Anti‐BDH2 Sigma Cat# HPA036028, RRID:AB_10670674
Rabbit Polyclonal Anti‐Hmgcl Abcam Cat# ab197022, RRID:AB_2797140
Rabbit Polyclonal Anti‐Hmgcll1 Abcam Cat# ab101576, RRID:AB_10712203
Rabbit monoclonal Anti‐HMGCS2 (IHC) Abcam Cat# ab137043, RRID: AB_2749817
Rabbit Polyclonal Anti‐HMGCS2 (WB) Sigma Cat# AV41562, RRID: AB_1850800
Rat Monoclonal Anti‐Ki67 Biolegend Cat# 652402, RRID:AB_11204254
Rabbit Polyclonal Anti‐SLC16A7/MCT2 Bioss Cat# bs‐3995R, RRID:AB_10855300
Rabbit Polyclonal Anti‐OXCT1 (SCOT1) Novus Biologicals Cat# NBP1‐82462, RRID:AB_11027140
Rabbit Polyclonal Anti‐OXCT2 (SCOT2) Thermo Fisher Scientific Cat# PA5‐49312, RRID:AB_2634766
Rat Polyclonal Human/Mouse anti‐Semaphorin 3C R&D Systems Cat# MAB1728, RRID:AB_2301533
Rabbit Polyclonal Anti‐SQLE Proteintech Cat# 12544‐1‐AP, RRID:AB_2195888
Rabbit Polyclonal Anti‐SLC5A8/SMCT1 Bioss Cat# bs‐6106R, RRID:AB_11108966
Goat Polyclonal Anti‐Rat IgG ‐ HRP Santa Cruz Biotechnolgy Cat# sc‐2006, RRID:AB_1125219
Goat Polyclonal Anti‐Mouse IgG Human ads ‐ HRP Southern Biotechnolgy Cat# 1030‐05, RRID:AB_2619742
Goat Polyclonal Anti‐Rabbit IgG – HRP Southern Biotechnolgy Cat# 4030‐05, RRID:AB_2687483
Rabbit Polyclonal Anti‐Goat IgG (H + L) – HRP Southern Biotechnolgy Cat# 6160‐05, RRID:AB_2796231
Goat Polyclonal Anti‐Mouse IgG (H + L) ‐ Alexa Fluor 488 Thermo Fisher Scientific Cat# A‐11029, RRID:AB_138404
Biological Samples
Healthy pancreas and PDA protein extract from PDA patients Leca et al (2016) https://doi.org/10.1172/JCI87734
Chemicals, Peptides, and Recombinant Proteins
Lipofectamine 3000 Thermo Fisher Scientific Cat# L3000015
G418 Thermo Fisher Scientific Cat# 10131027
Mitomycin C Sigma Aldrich Cat# 10107409001
Collagenase type V Sigma Aldrich Cat# C9263
Critical Commercial Assays
CellTrace™ CFSE Cell Proliferation Kit Thermo Fisher Scientific Cat# C34554
VECTASTAIN ABC kit Vector Cat# PK‐6100
Liquid DAB and substrate chromogen system DAKO Cat# K3468
Corning BioCoat™ Matrigel Invasion Chamber Corning Cat# 11553570
Trichrome Masson kit RAL DIAGNOSTICS Cat# 361350‐0000
Deposited Data
9‐week RMA data Guillaumond et al (2015) GSE61412
6‐week RMA data GSE127891
Experimental Models: Cell Lines
PK4a mouse cells Guillaumond et al (2013) RRID:CVCL_WB21
PANC‐1 human cells ATCC Cat# CRL‐1469, RRID:CVCL_0480
MiaPaCa‐2 human cells ATCC

Cat# CRL‐1420

RRID:CVCL_0428

Experimental Models: Organisms/Strains
Pdx1‐Cre; Ink4a/Arffl/fl;LSL‐KrasG12Dmice Aguirre et al (2003) https://doi.org/10.1101/gad.1158703
HsdCpb:NMRI‐Foxn1nu Envigo Cat# 5652667, RRID:MGI:5652667
Oligonucleotides
36B4 primer Forward AATCCCTGACGCACCGCCGTGATG Guillaumond et al (2015) https://doi.org/10.1073/pnas.1421601112
36B4 primer Reverse TGGGTTGTTTTCCAGGTGCCCTCG Guillaumond et al (2015) https://doi.org/10.1073/pnas.1421601112
Filamin B primer Forward AGTTAACCAGCCAGCATCCT Devis et al (2017) https://doi.org/10.1002/path.4851
Filamin B primer Reverse TGACATCGATGGTGTGGACA Devis et al (2017) https://doi.org/10.1002/path.4851
Epha2 primer Forward GGCTTCTTTATCCACCGCAG Devis et al (2017) https://doi.org/10.1002/path.4851
Epha2 primer Reverse CGAGGATGTCTTCAGCATGC Devis et al (2017) https://doi.org/10.1002/path.4851
Plau primer Forward TTCACCACCATCGAGAACCA Devis et al (2017) https://doi.org/10.1002/path.4851
Plau primer Reverse TTGCGTGTTGGAGTTAAGCC Devis et al (2017) https://doi.org/10.1002/path.4851
Recombinant DNA
HMGCL Crispr/Cas9 KO plasmids Santa Cruz Biotechnologies Cat# sc‐422425
HMGCL HDR plasmids Santa Cruz Biotechnologies Cat# sc‐403841‐HDR
Control CRISPR/Cas9Plasmid Santa Cruz Biotechnologies Cat# sc‐418922
pcDNA3.1(+)‐N‐DYK GeneScript /
ALCAM cDNA (pcDNA3.1(+)‐N‐DYK) GeneScript /
SQLE cDNA (pcDNA3.1(+)‐N‐DYK) GeneScript /
Software and Algorithms
R studio 3.4.4 RStudio, Inc. RRID:SCR_000432
Gene Set Enrichment Analysis with the fgsea package Bioconductor RRID:SCR_003199
Image J National Institutes of Health RRID:SCR_003070
Prism Version 5.03 Graph Pad RRID:SCR_002798
Ingenuity Pathway Analysis IPA® RRID:SCR_008653
FlowJo Version 10 FlowJo LLC RRID:SCR_008520
Other
DMEM medium without glutamine (Gln‐) Thermo Fisher Scientific Cat# 11960‐044
DMEM medium without glutamine nor branched chain amino acid (BCAA‐) Thermo Fisher Scientific Cat# ME15212L1
DMEM medium without glutamine nor glucose (Glc‐) Thermo Fisher Scientific Cat# A14430‐01
Filtered foetal bovine serum Hyclone Cat# SH30070.02
Dialyzed foetal bovine serum Hyclone Cat# SH30079.02
Foetal bovine serum BioSera Cat# FB‐1280
Antibiotic/antimycotic solution Thermo Fisher Scientific Cat# 15240062
Leucine Sigma Aldrich Cat# L8912
Isoleucine Sigma Aldrich Cat# I7403
Valine Sigma Aldrich Cat# V0513
Sodium 3‐hydroxybutyrate Sigma Aldrich Cat# 54965
Acetoacetate Sigma Aldrich Cat# A8509
l‐Leucine (13C6) Cambridge Isotope Laboratories Cat# CLM‐2262‐H‐PK
Sodium D‐3‐Hydroxybutyrate (13C4) Cambridge Isotope Laboratories Cat# CLM‐3853‐PK
l‐glutamine (200 mM) Thermo Fisher Scientific Cat# 25030024
TransIT®‐LT1 Mirus Cat# MIR2300