Table 1.
antiSMASH5.0 cluster types recognized in eight Pseudomonas genomes used in this study including a brief definition of their function
| Pseudomonas strain | Total no. of clusters | Cluster types | Description of metabolic clusters and examples of metabolites |
|---|---|---|---|
| CHA0 | 17 | NRPS (8), Bacteriocin (2), CDPS (1), T1PKS (1), T3PKS (1), NAGGN (1), Arylpolyene (1), Butyrolactone (1), Other (1) |
–NRPS (nonribosomal peptide synthetase cluster) e.g., orfamide, lipopeptide, viscosin, rhizomide, pyoverdine, enantiopyochelin –NRPS‐like (NRPS‐like fragment) e.g., mangotoxin, lankacidin –Bacteriocin (unspecified ribosomally synthesized and posttranslationally modified peptide product [RiPP] cluster) e.g., unknown –CDPS (tRNA‐dependent cyclodipeptide synthases) e.g., unknown –T1PKS (type I polyketide synthase) e.g., pyoluteorin –T3PKS (type III polyketide synthase) e.g., unknown –NAGGN (N‐acetylglutaminylglutamine amide) e.g., unknown –Arylpolyene (arylpolyene cluster) e.g., APE Vf –Butyrolactone (butyrolactone cluster) e.g., unknown –Betalactone (beta‐lactone containing protease inhibitor) –Ectoine (ectoine cluster) e.g., unknown –Lanthipeptide (lanthipeptide cluster) e.g., putative class II –LAP (linear azol(in)e‐containing peptides e.g., unknown –Other (unknown) e.g., pyrrolnitrin |
| Pf‐5 | 17 | NRPS (7), NRPS‐like (1), Bacteriocin (2), CDPS (1), T1PKS (1), T3PKS (1), NAGGN (1), Arylpolyene (1), Betalactone (1), Other (1) | |
| Q2‐87 | 15 | NRPS (4), NRPS‐like (1), Bacteriocin (3), T3PKS (1), NAGGN (1), Arylpolyene (1), Butyrolactone (1), Betalactone (1), Ectoine (1), Lanthipeptide (1) | |
| Q8R1‐96 | 13 | NRPS (6), NRPS‐like (1), Bacteriocin (1), T3PKS (1), NAGGN (1), Arylpolyene (1), Butyrolactone (1), Betalactone (1) | |
| 1M1‐96 | 12 | NRPS (3), NRPS‐like (1), Bacteriocin (1), T3PKS (1), NAGGN (1), Arylpolyene (1), Butyrolactone (1), Betalactone (1), Lanthipeptide (2) | |
| MVP1‐4 | 13 | NRPS (4), NRPS‐like (1), Bacteriocin (1), T3PKS (1), NAGGN (1), Arylpolyene (1), Butyrolactone (1), Betalactone (1), Lanthipeptide (2), LAP (1) | |
| F113 | 11 | NRPS (2), NRPS‐like (2), Bacteriocin (1), T3PKS (1), NAGGN (1), Arylpolyene (1), Butyrolactone (1), Betalactone (1), Lanthipeptide (1) | |
| Ph11C2 | 14 | NRPS (4), NRPS‐like (1), Bacteriocin (3), T3PKS (1), NAGGN (1), Arylpolyene (1), Butyrolactone (1), Betalactone (1), Lanthipeptide (1) |