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. 2019 Feb 11;9(9):5151–5157. doi: 10.1039/c8ra10182e

The results of application of the machine learning methods to the initial ECFP6 fingerprints and to the 2D mapped space (multiclass classification).

Descriptor set ML method Accuracy
GPCR ligands NR ligands
ECFP6 descriptors kNN 0.829 0.526
SVM 0.821 0.549
XGBoost 0.821 0.540
Random forest 0.788 0.537
pTSNE mapping (2D space) kNN 0.763 0.383
SVM 0.704 0.336
XGBoost 0.764 0.394
Random forest 0.745 0.360
PCA mapping (2 components) kNN 0.739 0.296
SVM 0.735 0.345
XGBoost 0.743 0.360
Random forest 0.735 0.349
MDS mapping (2D space) kNN 0.725 0.326
SVM 0.543 0.250
XGBoost 0.712 0.333
Random forest 0.707 0.328