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. 2022 Apr 14;25(5):104250. doi: 10.1016/j.isci.2022.104250
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

GFP-Trap® agarose beads ChromTek Cat# gta-20; RRID:AB_2631357
Rabbit polyclonal anti-giantin Abcam Cat# ab24586; RRID:AB_448163
Mouse monoclonal anti-vinculin Sigma-Aldrich Cat# V9131; RRID:AB_477629
Rabbit polyclonal anti-GFP Abcam Cat# ab6556; RRID:AB_305564
Mouse monoclonal anti-tubulin Life Technologies Cat# 13-8000; RRID:AB_2533035
Rabbit polyclonal anti-exoc6 Sigma-Aldrich Cat# HPA036285; RRID:AB_10673617
Rabbit polyclonal anti-exoc6 Abcam Abcam Cat# ab104200; RRID:AB_10716450
Mouse monoclonal anti-β1 integrin Santa Cruz Cat# sc-59829; RRID:AB_782090
Rabbit polyclonal anti-sortilin Abcam Cat# ab16640; RRID:AB_2192606
Monoclonal mouse anti-Rab33b Abcam Cat# ab57794; RRID:AB_945116
Monoclonal mouse anti-histidine AbD serotec Cat# MCA1396; RRID:AB_322084
Monoclonal mouse anti-GM130 BD Transduction Laboratories Cat# 610822; RRID:AB_398141
Monoclonal mouse anti-Exo70 Santa Cruz Cat# sc-365825; RRID:AB_10843358
Mouse monoclonal anti-Sec10 Santa Cruz Cat# sc-514802; RRID:AB_2891091
Goat anti-Mouse IgG(H + L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 Invitrogen Cat# A-21121; RRID:AB_2535764
Goat anti-Rabbit IgG(H + L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 Invitrogen Cat# A27034; RRID:AB_2610664
Goat anti-Mouse IgG(H + L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 594 Invitrogen Cat# A-21155; RRID:AB_2535785
Goat anti-Rabbit IgG(H + L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 594 Invitrogen Cat# A-11012; RRID:AB_2534079
Goat anti-Mouse IgG(H + L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 647 Invitrogen Cat# A-21240; RRID:AB_2535809
Goat anti-Rabbit IgG(H + L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 647 Invitrogen Cat# A-21244; RRID:AB_2535812

Bacterial and virus strains

Escherichia coli BL21 (DE3) Agilent Technologies Cat# 200131

Chemicals, peptides, and recombinant proteins

DAPI ((2-(4-Amidinophenyl)-6-indolecarbamidine) Sigma-Aldrich Cat# D9542
Rhodamine-conjugated phalloidin Invitrogen Cat# R415
Lipofectamin 2000 Life Technologies Cat# 10696153
Lipofectamin RNAiMax Life Technologies Cat# 13778150
His-dynabeads® Thermo Fisher Cat# 10103D
D-biotin Sigma-Aldrich Cat# B4501
Fibronectin Sigma Cat# F2006

Critical commercial assays

Yeast two-hybrid screen Hybrigenics services N/A

Experimental models: Cell lines

U-2 OS ATCC Cat# HTB-96; RRID:CVCL_0042
hTERT RPE-1 ATCC Cat# CRL-4000; RRID:CVCL_4388

Oligonucleotides

siRNA targeting sequence: Rab33b (siRNA_1) Dharmacon Cat# J-008909-07
siRNA targeting sequence: Rab33b (siRNA_2) Dharmacon Cat# J-008909-08
siRNA targeting sequence: Rab33b (siRNA_3) Dharmacon Cat# J-008909-06
siRNA targeting sequence: Rab33b (siRNA_4) Dharmacon Cat# J-008909-09
Control siRNA: ACU UCG AGC GUG CAU GGC UTT MWG-Biotech N/A
siRNAs used in the RNAi primary screen, see Table S1 Dharmacon N/A

Recombinant DNA

pEGFP-C1 vector BD Bioscience Clontech Cat# 6084-1
pEGFP-C1 Rab33b wt GenScript N/A
pEGFP-C1 Rab33b Q92L GenScript N/A
pEGFP-C1 Rab33b T47N GenScript N/A
pcDNA3.1-N-myc Rab33b wt GenScript N/A
pET-16b Rab33b wt GenScript N/A
pET-16b Rab33b Q92L GenScript N/A
pET-16b Rab33b T47N GenScript N/A
pET-16b Rab9 wt Progida et al., 2012 N/A
pET-16b Rab9 Q66L This paper N/A
pCAG-mCherry-C-Sec15A Kazuhisa Nakayama.
Katoh et al., 2015
N/A
RFP-vinculin Harald Stenmark. Lobert and Stenmark, 2012 N/A
Vinculin-GFP Xian Hu N/A
mApple-Integrin-β1 Addgene (from Michael Davidson) Addgene plasmid # 54914; RRID:Addgene_54914
YFP-VSV-G Susanne Pfeffer.
Espinosa et al., 2009
N/A
BFP-Rab33b This paper N/A
Ii-STR-TNF-SBP-EGFP Addgene (from Franck Perez). Boncompain et al., 2012 Addgene plasmid # 65280; RRID:Addgene_65280

Software and algorithms

ImageJ https://imagej.nih.gov/ij/ N/A
GraphPad Prism 9 GraphPad Software Inc., https://www.graphpad.com N/A
IncuCyte Zoom software analysis Essen bioscience N/A