Molecular docking of peptides (belonging to α1 chain) profile of the fraction from yak bone collagen peptides (YBCP) identified by HPLC-MS/MSa.
Rank | Amino acid sequence | Mr Calc. | Site range | Length | Score | -CE (kcal mol−1) |
---|---|---|---|---|---|---|
1 | GKSGDRGETGPAGPAGPIGPVGAR | 2160.1036 | 1060–1083 | 24 | 75.43 | 158.080 |
2 | GKSGDRGETGPAGPAGPIGPVGA | 2004.0025 | 1060–1082 | 23 | 63.23 | 132.928 |
3 | SGDRGETGPAGPAGPIGPVGA | 1818.8861 | 1062–1082 | 21 | 75.10 | 131.953 |
4 | GKSGDRGETGPAGPAGPIGP | 1776.8755 | 1060–1079 | 20 | 42.04 | 119.609 |
5 | GKSGDRGETGPAGPAGPIGPV | 1875.9439 | 1060–1080 | 21 | 69.04 | 117.383 |
6 | GADGAPGKDGVRGL | 1268.6473 | 751–764 | 14 | 42.97 | 117.184 |
7 | GDRGETGPAGPAGPIGPVGA | 1731.8540 | 1063–1082 | 20 | 69.81 | 108.143 |
8 | SGDRGETGPAGPAGPIGPV | 1690.8275 | 1062–1080 | 19 | 91.32 | 107.348 |
9 | KSGDRGETGPAGPAGPIGPV | 1818.9224 | 1061–1080 | 20 | 77.53 | 105.362 |
10 | GDRGETGPAGPAGPIGPV | 1603.7955 | 1063–1080 | 18 | 99.84 | 98.992 |
11 | GPPGPAGPAGERGEQGPA | 1600.7594 | 619–636 | 18 | 56.78 | 98.003 |
12 | GAPGADGPAGAPGTPGPQG | 1530.7063 | 934–952 | 19 | 62.80 | 89.869 |
13 | DRGETGPAGPAGPIGPV | 1546.7740 | 1064–1080 | 17 | 76.90 | 86.238 |
14 | STGISVPGPMGPSGPR | 1511.7403 | 171–186 | 16 | 58.51 | 85.072 |
15 | RGETGPAGPAGPIGPVGA | 1559.8056 | 1065–1082 | 18 | 45.22 | 83.832 |
16 | TGPAGPAGPIGPVGA | 1217.6405 | 1068–1082 | 15 | 51.32 | 75.836 |
17 | RGETGPAGPAGPIGPV | 1431.7470 | 1065–1080 | 16 | 56.63 | 65.216 |
18 | GERGFPGLPGPS | 1169.5829 | 967–978 | 12 | 45.82 | 62.140 |
19 | GISVPGPMGPSGPR | 1307.6656 | 173–186 | 14 | 73.13 | 59.186 |
20 | ISVPGPMGPSGPR | 1266.6391 | 174–186 | 13 | 76.32 | 58.233 |
21 | TGPAGPAGPIGPV | 1089.5819 | 1068–1080 | 13 | 50.86 | 54.586 |
22 | SVPGPMGPSGPR | 1153.5550 | 175–186 | 12 | 60.96 | 48.188 |
23 | GISVPGPMGPS | 997.4903 | 173–183 | 11 | 41.83 | 46.853 |
24 | GPAGPAGPIGPV | 988.5342 | 1069–1080 | 12 | 63.19 | 45.080 |
25 | GPAGPPGPIGNV | 1031.5400 | 844–855 | 12 | 93.84 | 42.997 |
26 | GPAGPIGPV | 763.4229 | 1072–1080 | 9 | 42.18 | 34.299 |
27 | ISVPGPM | 715.3575 | 174–180 | 7 | 51.80 | 29.412 |
28 | GLPGPPGAPGPQ | 1043.5400 | 187–198 | 12 | 47.00 | 29.395 |
Mr Calc., molecular calculation; CE, CDOCKER_energy.