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. 2019 May 10;9(26):14627–14637. doi: 10.1039/c9ra00945k

Molecular docking of peptides (belonging to α1 chain) profile of the fraction from yak bone collagen peptides (YBCP) identified by HPLC-MS/MSa.

Rank Amino acid sequence Mr Calc. Site range Length Score -CE (kcal mol−1)
1 GKSGDRGETGPAGPAGPIGPVGAR 2160.1036 1060–1083 24 75.43 158.080
2 GKSGDRGETGPAGPAGPIGPVGA 2004.0025 1060–1082 23 63.23 132.928
3 SGDRGETGPAGPAGPIGPVGA 1818.8861 1062–1082 21 75.10 131.953
4 GKSGDRGETGPAGPAGPIGP 1776.8755 1060–1079 20 42.04 119.609
5 GKSGDRGETGPAGPAGPIGPV 1875.9439 1060–1080 21 69.04 117.383
6 GADGAPGKDGVRGL 1268.6473 751–764 14 42.97 117.184
7 GDRGETGPAGPAGPIGPVGA 1731.8540 1063–1082 20 69.81 108.143
8 SGDRGETGPAGPAGPIGPV 1690.8275 1062–1080 19 91.32 107.348
9 KSGDRGETGPAGPAGPIGPV 1818.9224 1061–1080 20 77.53 105.362
10 GDRGETGPAGPAGPIGPV 1603.7955 1063–1080 18 99.84 98.992
11 GPPGPAGPAGERGEQGPA 1600.7594 619–636 18 56.78 98.003
12 GAPGADGPAGAPGTPGPQG 1530.7063 934–952 19 62.80 89.869
13 DRGETGPAGPAGPIGPV 1546.7740 1064–1080 17 76.90 86.238
14 STGISVPGPMGPSGPR 1511.7403 171–186 16 58.51 85.072
15 RGETGPAGPAGPIGPVGA 1559.8056 1065–1082 18 45.22 83.832
16 TGPAGPAGPIGPVGA 1217.6405 1068–1082 15 51.32 75.836
17 RGETGPAGPAGPIGPV 1431.7470 1065–1080 16 56.63 65.216
18 GERGFPGLPGPS 1169.5829 967–978 12 45.82 62.140
19 GISVPGPMGPSGPR 1307.6656 173–186 14 73.13 59.186
20 ISVPGPMGPSGPR 1266.6391 174–186 13 76.32 58.233
21 TGPAGPAGPIGPV 1089.5819 1068–1080 13 50.86 54.586
22 SVPGPMGPSGPR 1153.5550 175–186 12 60.96 48.188
23 GISVPGPMGPS 997.4903 173–183 11 41.83 46.853
24 GPAGPAGPIGPV 988.5342 1069–1080 12 63.19 45.080
25 GPAGPPGPIGNV 1031.5400 844–855 12 93.84 42.997
26 GPAGPIGPV 763.4229 1072–1080 9 42.18 34.299
27 ISVPGPM 715.3575 174–180 7 51.80 29.412
28 GLPGPPGAPGPQ 1043.5400 187–198 12 47.00 29.395
a

Mr Calc., molecular calculation; CE, CDOCKER_energy.