TABLE 2.
Cell Type | Gene Symbol | None | Purity | Tumor | Normal | ||||
---|---|---|---|---|---|---|---|---|---|
Core | P | Core | P | R | P | R | P | ||
Tumor associated | MS4A4A | 0.08 | 0.087 | −0.379 | ** | 0.06 | 0.32 | 0.15 | 0.34 |
Macrophage (TAM) | CCL2 | 0.127 | ** | −0.354 | ** | 0.003 | 0.96 | 0.14 | 0.38 |
CCR5 | 0.091 | 0.052 | −0.436 | ** | 0.11 | 0.058 | 0.38 | 0.14 | |
CD80 | 0.103 | * | −0.313 | ** | 0.028 | 0.64 | 0.41 | ** | |
CD86 | 0.131 | ** | −0.42 | ** | 0.081 | 0.15 | 0.2 | 0.22 | |
Monocyte | CD14 | 0.003 | 0.954 | −0.394 | ** | 0.07 | 0.25 | 0.13 | 0.43 |
CD16 | −0.027 | 0.567 | −0.222 | ** | 0.11 | 0.065 | 0.2 | 0.22 | |
CD115 | −0.034 | 0.468 | −0.366 | ** | 0.022 | 0.72 | 0.18 | 0.25 | |
Neutrophil | CD11b | −0.098 | * | −0.25 | ** | 0.013 | 0.83 | 0.25 | 0.11 |
CD15 | 0.219 | ** | 0.019 | 0.699 | * | 0.86 | 0.37 | * | |
CD66b | −0.259 | ** | 0.103 | * | −0.045 | 0.46 | 0.27 | 0.09 | |
NK | CD7 | 0.013 | 0.783 | −0.472 | ** | 0.11 | 0.061 | -0.084 | 0.6 |
XCL1 | −0.021 | 0.66 | −0.241 | ** | 0.019 | 0.76 | -0.14 | 0.39 | |
KIR3DL1 | 0.113 | * | −0.249 | ** | 0.36 | ** | 0.099 | 0.54 | |
Dendritic cell | CD1C | −0.073 | 0.121 | −0.331 | ** | −0.076 | 0.21 | 0.085 | 0.6 |
CD11c | 0.061 | 0.196 | −0.427 | ** | 0.06 | 0.32 | 0.45 | ** | |
CD141 | 0.038 | 0.42 | −0.361 | ** | 0.018 | 0.77 | 0.2 | 0.21 | |
B cell | CD19 | −0.132 | ** | −0.414 | ** | −0.0096 | 0.87 | 0.23 | 0.14 |
CD20 | 0.005 | 0.917 | −0.023 | 0.64 | −0.014 | 0.82 | 0.31 | * | |
CD38 | −0.023 | 0.621 | −0.384 | ** | 0.05 | 0.4 | 0.19 | 0.23 | |
CD8+ T cell | CD8A | 0.114 | * | −0.397 | ** | 0.22 | ** | 0.043 | 0.79 |
CD8B | 0.01 | 0.832 | 0.221 | ** | 0.05 | 0.41 | -0.1 | 0.52 | |
Th1 | TBX21 | 0.123 | ** | −0.4 | ** | 0.17 | ** | 0.13 | 0.4 |
STAT4 | 0.147 | ** | −0.377 | ** | 0.12 | 0.053 | 0.095 | 0.55 | |
IL12RB2 | 0.113 | * | −0.238 | ** | 0.17 | ** | 0.1 | 0.52 | |
IL27RA | 0.039 | 0.408 | −0.24 | ** | 0.13 | * | 0.22 | 0.16 | |
STAT1 | 0.259 | ** | −0.274 | ** | 0.29 | ** | 0.096 | 0.55 | |
IFN-γ | 0.176 | ** | −0.241 | ** | 0.27 | ** | 0.1 | 0.53 | |
TNF-α | −0.02 | 0.67 | −0.255 | ** | 0.022 | 0.72 | -0.026 | 0.87 | |
Th2 | GATA3 | −0.065 | 0.16 | −0.364 | ** | -0.028 | 0.64 | 0.22 | 0.17 |
CCR3 | −0.068 | 0.15 | −0.173 | ** | 0.006 | 0.92 | -0.25 | 0.12 | |
STAT6 | −0.005 | 0.91 | 0.012 | 0.815 | 0.012 | 0.85 | -0.03 | 0.85 | |
STAT5A | −0.096 | * | −0.161 | ** | 0.039 | 0.52 | 0.078 | 0.63 | |
Th17 | STAT3 | 0.187 | ** | −0.225 | ** | 0.067 | 0.27 | 0.28 | 0.073 |
IL-17 A | −0.064 | 0.175 | −0.012 | 0.814 | −0.038 | 0.53 | 0.27 | 0.092 | |
IL-21R | −0.023 | 0.626 | −0.441 | ** | 0.058 | 0.34 | 0.32 | * | |
IL-23R | 0.024 | 0.61 | 0.023 | 0.65 | −0.041 | 0.5 | 0.098 | 0.54 | |
Treg | FOXP3 | −0.095 | * | −0.382 | ** | −0.038 | 0.53 | 0.26 | 0.1 |
IL2RA | 0.098 | * | −0.401 | ** | 0.11 | 0.075 | 0.4 | ** | |
CCR8 | 0.014 | 0.76 | −0.336 | ** | −0.029 | 0.63 | 0.33 | * | |
Macrophage | CD68 | 0.031 | 0.51 | −0.317 | ** | 0.047 | 0.44 | 0.24 | 0.14 |
CD11b | −0.006 | 0.89 | −0.355 | ** | 0.013 | 0.83 | 0.25 | 0.11 |
Note: None, Correlation without adjustment. Purity, correlation adjusted by purity. Cor, R value of Spearman’s correlation. *p < 0.05; **p < 0.01.