REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
anti-Pgam1 antibody | Abcam | ab2220, RRID: AB_302900 |
anti-β actin antibody(13 × 105) | Cell Signaling | #4970, RRID: AB_2223172 |
anti-GAPDH antibody | Cell Signaling | #2118, RRID: AB_561053 |
anti-Tubulin antibody | Cell Signaling | #2125, RRID: AB_2619646 |
anti-p62 antibody | Abcam | ab219581, RRID: AB_219581 |
anti-phospho mTOR antibody | Cell Signaling | #2971, RRID: AB_330970 |
anti-mTOR antibody | Cell Signaling | #2972, RRID: AB_330978 |
anti-Cpt1b antibody | Santa Cruz | sc-20522, RRID: AB_2084698 |
anti-Cpt1b antibody | Proteintech | 22170-1-AP, RRID: AB_2713959 |
anti-Ucp1 antibody | Abcam | ab10983, RRID: AB_2241462 |
anti-Cre antibody | Cell Signaling | #12830, RRID: AB_2631055 |
anti-F4/80 antibody | Abcam | ab111101, RRID: AB_10859466 |
wheat germ agglutinin-conjugated Alexa Fluor 488 | Thermo Fisher Scientific | W11261 |
Hoechst | Life Technologies | 33258 |
horseradish peroxidase-conjugated anti-rabbit immunoglobulin G | Jackson Immunoresearch | #111-035-003, RRID: AB_2313567 |
donkey anti-goat IgG H&L (Cy5) | Abcam | ab6566, RRID: AB_955056 |
goat anti-rabbit IgG H&L (DyLight488) | Abcam | ab96899, RRID: AB_10679361 |
goat anti-rabbit IgG H&L (Cy5) | ab97077, RRID: AB_10679461 | |
Biotin-SP (long spacer) AffiniPure Donkey Anti-Rabbit IgG (H + L) | Jackson Immunoresearch | 711-065-152, RRID: AB_2340593 |
BB515 Streptavidin | BD | 564453, RRID: AB_2869580 |
Cy5-streptavidin conjugate | Invitrogen | 43-4316 |
Bacterial and virus strains | ||
AAV-DJ Helper Free shRNA Expression System | Cell Biolabs Inc | VPK-413-DJ |
AAV-DJ Helper Free Expression System | Cell Biolabs Inc | VPK-410-DJ |
Chemicals, peptides, and recombinant proteins | ||
L-methionine sulfone | WAKO | 502-76641 |
MES | Dojindo | 349-01623 |
CSA | WAKO | 037-01032 |
NADH | Sigma-Aldrich | N7410-15VL |
ADP | Sigma-Aldrich | A4386-1G |
LDH | Sigma-Aldrich | L1254-1KU |
PK | Sigma-Aldrich | P7768-1KU |
Enolase | Sigma-Aldrich | E6126-500UN |
2,3-DPG | Santa Cruz | SC-213964 |
3-PGA | Santa Cruz | sc-214793 |
Rapamycin | WAKO | 550-83271 |
Leucine | Sigma-Aldrich | L8000 |
Isoleucine | Sigma-Aldrich | I2752 |
Valine | Sigma-Aldrich | V0500 |
MHY1485 | Sigma-Aldrich | SML0810 |
Critical commercial assays | ||
Norepinephrine ELISA Kit | Abnova | KA1891 |
In Situ Cell Death Detection Kit, Fluorescein | Roche | 1684795 |
Ultra Sensitive Mouse Insulin ELISA Kit | Morinaga | M1104 |
Branched Chain Amino Acid Kit | Sigma-Aldrich | MAK003 |
Agilent SurePrint G3 Mouse GE microarray (G4852A) | Agilent | G4852A |
Deposited data | ||
DNA microarray | This paper | GSE186030 |
Single cell RNA-sequence | This paper | GSE200374 |
Experimental models: Cell lines | ||
NIH-3T3L1 cells | ATCC | CL-173 |
Experimental models: Organisms/strains | ||
Mouse: Adipoq-Cre+: Pgam1flox/flox | Adipoq-Cre; Eguchi J et al., 2011. floxed Pgam1; Generated in our lab. | N/A |
Mouse: Ucp1-Cre+: Pgam1flox/flox | UCP1-Cre; Kong X et al., 2014. floxed Pgam1; Generated in our lab. | N/A |
Oligonucleotides | ||
Forward primer for mouse Actb; 5′-CTAAGGCCAACCGTGAAAAG-3′ | This paper | N/A |
Reverse primer for mouse Actb; 5′-ACCAGAGGCATACAGGGACA-3′ | This paper | N/A |
Forward primer for mouse Rplp0; 5′-GATGCCCAGGGAAGACAG-3′ | This paper | N/A |
Reverse primer for mouse Rplp0; 5′-ACAATGAAGCATTTTGGATAA-3′ | This paper | N/A |
Forward primer for mouse Pgam1; 5′-GCCTGATCACCCCTTCTACA-3′ | This paper | N/A |
Reverse primer for mouse Pgam1; 5′-CTCTTTGATCTGGGGGACAA-3′ | This paper | N/A |
Forward primer for mouse Pgam2; 5′-GGCATTGTGAAACATCTGGAA-3′ | This paper | N/A |
Reverse primer for mouse Pgam2; 5′-AACCTCATGGGCTTGGTG-3′ | This paper | N/A |
Forward primer for mouse Cpt1b; 5′-GAGTGACTGGTGGGAAGAATATG-3′ | This paper | N/A |
Reverse primer for mouse Cpt1b; 5′-GCTGCTTGCACATTTGTGTT-3′ | This paper | N/A |
Forward primer for mouse Ucp1; 5′-GGCCTCTACGACTCAGTCCA-3′ | This paper | N/A |
Reverse primer for mouse Ucp1; 5′-TAAGCCGGCTGAGATCTTGT-3′ | This paper | N/A |
Forward primer for mouse Tnfrsf9; 5′-CGTCTGTCGACCCTGGAC-3′ | This paper | N/A |
Reverse primer for mouse Tnfrsf9; 5′-CACGTCCTTCTCCGTGGT-3′ | This paper | N/A |
Forward primer for mouse Cidea 5′-TTCAAGGCCGTGTTAAGGA-3′ | This paper | N/A |
Reverse primer for mouse Cidea 5′-CCTTTGGTGCTAGGCTTGG-3′ | This paper | N/A |
Forward primer for mouse Egln3; 5′-TGTCTGGTACTTCGATGCTGA-3′ | This paper | N/A |
Reverse primer for mouse Egln3; 5′-AGCAAGAGCAGATTCAGTTTTTC-3′ | This paper | N/A |
Forward primer for mouse Kcnk3; 5′-CCTTCTACTTCGCCATCACC-3′ | This paper | N/A |
Reverse primer for mouse Kcnk3; 5′-GCGTAGAACATGCAGAACACC-3′ | This paper | N/A |
Forward primer for mouse Mtus1; 5′-AAACACTGTCATTTTCCACACAG-3′ | This paper | N/A |
Reverse primer for mouse Mtus1; 5′-CTGGGTCTGGATGCATAGG-3′ | This paper | N/A |
Forward primer for mouse Ppargc1a; 5′-TGAAAGGGCCAAACAGAGAG-3′ | This paper | N/A |
Reverse primer for mouse Ppargc1a; 5′-GTAAATCACACGGCGCTCTT-3′ | This paper | N/A |
Forward primer for mouse Prdm16; 5′-ACAGGCAGGCTAAGAACCAG-3′ | This paper | N/A |
Reverse primer for mouse Prdm16; 5′-CGTGGAGAGGAGTGTCTTCAG-3′ | This paper | N/A |
Forward primer for mouse Tbx1; 5′-TTTGTGCCCGTAGATGACAA-3′ | This paper | N/A |
Reverse primer for mouse Tbx1; 5′-CTCGGCCAGGTGTAGCAG-3′ | This paper | N/A |
Forward primer for mouse Tmem26; 5′-CTGCTCAACCTCTTGCTGGT-3′ | This paper | N/A |
Reverse primer for mouse Tmem26; 5′-AAGATGGCCGGAGAAAGC-3′ | This paper | N/A |
Recombinant DNA | ||
Forward sequence for sh-mouse Pgam1; 5′-GATCCGGGCATCCCTATCGTCTATGATTCAAGAG ATCATAGACGATAGGGATGCCCTTTTTTACGCGTG-3′ |
This paper | N/A |
Reverse sequence for sh-mouse Pgam1; 5′-AATTCACGCGTAAAAAAGGGCATCCCTATCGTCT ATGATCTCTTGAATCATAGACGATAGGGATGCCCG-3′ |
This paper | N/A |
Software and algorithms | ||
SPSS version 24 software | IBM | N/A |
KEGG identifiers | KEGG (Kyoto Encyclopedia of Genes and Genomes) | N/A |