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. 2022 Apr 18;25(5):104268. doi: 10.1016/j.isci.2022.104268
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

anti-Pgam1 antibody Abcam ab2220, RRID: AB_302900
anti-β actin antibody(13 × 105) Cell Signaling #4970, RRID: AB_2223172
anti-GAPDH antibody Cell Signaling #2118, RRID: AB_561053
anti-Tubulin antibody Cell Signaling #2125, RRID: AB_2619646
anti-p62 antibody Abcam ab219581, RRID: AB_219581
anti-phospho mTOR antibody Cell Signaling #2971, RRID: AB_330970
anti-mTOR antibody Cell Signaling #2972, RRID: AB_330978
anti-Cpt1b antibody Santa Cruz sc-20522, RRID: AB_2084698
anti-Cpt1b antibody Proteintech 22170-1-AP, RRID: AB_2713959
anti-Ucp1 antibody Abcam ab10983, RRID: AB_2241462
anti-Cre antibody Cell Signaling #12830, RRID: AB_2631055
anti-F4/80 antibody Abcam ab111101, RRID: AB_10859466
wheat germ agglutinin-conjugated Alexa Fluor 488 Thermo Fisher Scientific W11261
Hoechst Life Technologies 33258
horseradish peroxidase-conjugated anti-rabbit immunoglobulin G Jackson Immunoresearch #111-035-003, RRID: AB_2313567
donkey anti-goat IgG H&L (Cy5) Abcam ab6566, RRID: AB_955056
goat anti-rabbit IgG H&L (DyLight488) Abcam ab96899, RRID: AB_10679361
goat anti-rabbit IgG H&L (Cy5) ab97077, RRID: AB_10679461
Biotin-SP (long spacer) AffiniPure Donkey Anti-Rabbit IgG (H + L) Jackson Immunoresearch 711-065-152, RRID: AB_2340593
BB515 Streptavidin BD 564453, RRID: AB_2869580
Cy5-streptavidin conjugate Invitrogen 43-4316

Bacterial and virus strains

AAV-DJ Helper Free shRNA Expression System Cell Biolabs Inc VPK-413-DJ
AAV-DJ Helper Free Expression System Cell Biolabs Inc VPK-410-DJ

Chemicals, peptides, and recombinant proteins

L-methionine sulfone WAKO 502-76641
MES Dojindo 349-01623
CSA WAKO 037-01032
NADH Sigma-Aldrich N7410-15VL
ADP Sigma-Aldrich A4386-1G
LDH Sigma-Aldrich L1254-1KU
PK Sigma-Aldrich P7768-1KU
Enolase Sigma-Aldrich E6126-500UN
2,3-DPG Santa Cruz SC-213964
3-PGA Santa Cruz sc-214793
Rapamycin WAKO 550-83271
Leucine Sigma-Aldrich L8000
Isoleucine Sigma-Aldrich I2752
Valine Sigma-Aldrich V0500
MHY1485 Sigma-Aldrich SML0810

Critical commercial assays

Norepinephrine ELISA Kit Abnova KA1891
In Situ Cell Death Detection Kit, Fluorescein Roche 1684795
Ultra Sensitive Mouse Insulin ELISA Kit Morinaga M1104
Branched Chain Amino Acid Kit Sigma-Aldrich MAK003
Agilent SurePrint G3 Mouse GE microarray (G4852A) Agilent G4852A

Deposited data

DNA microarray This paper GSE186030
Single cell RNA-sequence This paper GSE200374

Experimental models: Cell lines

NIH-3T3L1 cells ATCC CL-173

Experimental models: Organisms/strains

Mouse: Adipoq-Cre+: Pgam1flox/flox Adipoq-Cre; Eguchi J et al., 2011. floxed Pgam1; Generated in our lab. N/A
Mouse: Ucp1-Cre+: Pgam1flox/flox UCP1-Cre; Kong X et al., 2014. floxed Pgam1; Generated in our lab. N/A

Oligonucleotides

Forward primer for mouse Actb; 5′-CTAAGGCCAACCGTGAAAAG-3′ This paper N/A
Reverse primer for mouse Actb; 5′-ACCAGAGGCATACAGGGACA-3′ This paper N/A
Forward primer for mouse Rplp0; 5′-GATGCCCAGGGAAGACAG-3′ This paper N/A
Reverse primer for mouse Rplp0; 5′-ACAATGAAGCATTTTGGATAA-3′ This paper N/A
Forward primer for mouse Pgam1; 5′-GCCTGATCACCCCTTCTACA-3′ This paper N/A
Reverse primer for mouse Pgam1; 5′-CTCTTTGATCTGGGGGACAA-3′ This paper N/A
Forward primer for mouse Pgam2; 5′-GGCATTGTGAAACATCTGGAA-3′ This paper N/A
Reverse primer for mouse Pgam2; 5′-AACCTCATGGGCTTGGTG-3′ This paper N/A
Forward primer for mouse Cpt1b; 5′-GAGTGACTGGTGGGAAGAATATG-3′ This paper N/A
Reverse primer for mouse Cpt1b; 5′-GCTGCTTGCACATTTGTGTT-3′ This paper N/A
Forward primer for mouse Ucp1; 5′-GGCCTCTACGACTCAGTCCA-3′ This paper N/A
Reverse primer for mouse Ucp1; 5′-TAAGCCGGCTGAGATCTTGT-3′ This paper N/A
Forward primer for mouse Tnfrsf9; 5′-CGTCTGTCGACCCTGGAC-3′ This paper N/A
Reverse primer for mouse Tnfrsf9; 5′-CACGTCCTTCTCCGTGGT-3′ This paper N/A
Forward primer for mouse Cidea 5′-TTCAAGGCCGTGTTAAGGA-3′ This paper N/A
Reverse primer for mouse Cidea 5′-CCTTTGGTGCTAGGCTTGG-3′ This paper N/A
Forward primer for mouse Egln3; 5′-TGTCTGGTACTTCGATGCTGA-3′ This paper N/A
Reverse primer for mouse Egln3; 5′-AGCAAGAGCAGATTCAGTTTTTC-3′ This paper N/A
Forward primer for mouse Kcnk3; 5′-CCTTCTACTTCGCCATCACC-3′ This paper N/A
Reverse primer for mouse Kcnk3; 5′-GCGTAGAACATGCAGAACACC-3′ This paper N/A
Forward primer for mouse Mtus1; 5′-AAACACTGTCATTTTCCACACAG-3′ This paper N/A
Reverse primer for mouse Mtus1; 5′-CTGGGTCTGGATGCATAGG-3′ This paper N/A
Forward primer for mouse Ppargc1a; 5′-TGAAAGGGCCAAACAGAGAG-3′ This paper N/A
Reverse primer for mouse Ppargc1a; 5′-GTAAATCACACGGCGCTCTT-3′ This paper N/A
Forward primer for mouse Prdm16; 5′-ACAGGCAGGCTAAGAACCAG-3′ This paper N/A
Reverse primer for mouse Prdm16; 5′-CGTGGAGAGGAGTGTCTTCAG-3′ This paper N/A
Forward primer for mouse Tbx1; 5′-TTTGTGCCCGTAGATGACAA-3′ This paper N/A
Reverse primer for mouse Tbx1; 5′-CTCGGCCAGGTGTAGCAG-3′ This paper N/A
Forward primer for mouse Tmem26; 5′-CTGCTCAACCTCTTGCTGGT-3′ This paper N/A
Reverse primer for mouse Tmem26; 5′-AAGATGGCCGGAGAAAGC-3′ This paper N/A

Recombinant DNA

Forward sequence for sh-mouse Pgam1; 5′-GATCCGGGCATCCCTATCGTCTATGATTCAAGAG
ATCATAGACGATAGGGATGCCCTTTTTTACGCGTG-3′
This paper N/A
Reverse sequence for sh-mouse Pgam1; 5′-AATTCACGCGTAAAAAAGGGCATCCCTATCGTCT
ATGATCTCTTGAATCATAGACGATAGGGATGCCCG-3′
This paper N/A

Software and algorithms

SPSS version 24 software IBM N/A
KEGG identifiers KEGG (Kyoto Encyclopedia of Genes and Genomes) N/A