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. Author manuscript; available in PMC: 2022 May 3.
Published in final edited form as: Sci Transl Med. 2021 Oct 20;13(616):eabj1008. doi: 10.1126/scitranslmed.abj1008

Table 2.

Differentially expressed genes.

Top 25 DEG based on EdgeR unadjusted p-value from EdgeR adjusted p-values from EdgeR unadjusted p-value from DEseq2 adjusted p-values from Deseq2
Upregulated genes
Ifit3 3.53E-04 5.11E-01 7.84E-07 6.86E-04
Ifi204 1.20E-04 5.08E-01 7.54E-10 3.58E-06
Oas2 5.26E-04 5.36E-01 1.49E-09 5.30E-06
Klra2 1.02E-03 5.89E-01 1.17E-05 5.94E-03
Ifit3b 6.97E-04 5.36E-01 1.46E-06 1.09E-03
Ifitm3 9.84E-04 5.89E-01 1.68E-05 7.72E-03
Rtp4 6.70E-04 5.36E-01 4.85E-07 4.61E-04
Oas1a 7.68E-04 5.36E-01 7.36E-06 4.77E-03
Ifi44 7.94E-04 5.36E-01 3.09E-07 3.38E-04
Smpdl3b 8.51E-04 5.36E-01 4.43E-06 3.00E-03
Irf7 4.85E-04 5.36E-01 1.66E-08 3.93E-05
Ifit1 2.04E-04 5.08E-01 3.27E-08 6.65E-05
Usp18 6.09E-04 5.36E-01 9.32E-07 7.37E-04
Trim30c 7.24E-04 5.36E-01 1.45E-05 6.87E-03
Parp12 2.46E-04 5.08E-01 3.48E-07 3.54E-04
Gm5431 4.67E-04 5.36E-01 2.48E-07 2.99E-04
Marco 1.68E-04 5.08E-01 4.05E-08 7.21E-05
Oasl2 3.47E-05 4.56E-01 3.32E-15 4.73E-11
Arhgef37 6.29E-05 4.56E-01 4.25E-10 3.03E-06
Tppp3 2.21E-04 5.08E-01 4.18E-09 1.19E-05
Irgm1 8.33E-04 5.36E-01 1.21E-05 5.94E-03
Slfn5 3.50E-04 5.11E-01 1.43E-07 2.26E-04
Ifi206 6.99E-04 5.36E-01 9.79E-06 5.16E-03
Downregulated genes
Zdhhc1 3.04E-04 5.11E-01 8.59E-01 1.00
rsc1a1 5.39E-04 5.36E-01 not found not found