Table 2.
Differentially expressed genes.
Top 25 DEG based on EdgeR | unadjusted p-value from EdgeR | adjusted p-values from EdgeR | unadjusted p-value from DEseq2 | adjusted p-values from Deseq2 |
---|---|---|---|---|
Upregulated genes | ||||
Ifit3 | 3.53E-04 | 5.11E-01 | 7.84E-07 | 6.86E-04 |
Ifi204 | 1.20E-04 | 5.08E-01 | 7.54E-10 | 3.58E-06 |
Oas2 | 5.26E-04 | 5.36E-01 | 1.49E-09 | 5.30E-06 |
Klra2 | 1.02E-03 | 5.89E-01 | 1.17E-05 | 5.94E-03 |
Ifit3b | 6.97E-04 | 5.36E-01 | 1.46E-06 | 1.09E-03 |
Ifitm3 | 9.84E-04 | 5.89E-01 | 1.68E-05 | 7.72E-03 |
Rtp4 | 6.70E-04 | 5.36E-01 | 4.85E-07 | 4.61E-04 |
Oas1a | 7.68E-04 | 5.36E-01 | 7.36E-06 | 4.77E-03 |
Ifi44 | 7.94E-04 | 5.36E-01 | 3.09E-07 | 3.38E-04 |
Smpdl3b | 8.51E-04 | 5.36E-01 | 4.43E-06 | 3.00E-03 |
Irf7 | 4.85E-04 | 5.36E-01 | 1.66E-08 | 3.93E-05 |
Ifit1 | 2.04E-04 | 5.08E-01 | 3.27E-08 | 6.65E-05 |
Usp18 | 6.09E-04 | 5.36E-01 | 9.32E-07 | 7.37E-04 |
Trim30c | 7.24E-04 | 5.36E-01 | 1.45E-05 | 6.87E-03 |
Parp12 | 2.46E-04 | 5.08E-01 | 3.48E-07 | 3.54E-04 |
Gm5431 | 4.67E-04 | 5.36E-01 | 2.48E-07 | 2.99E-04 |
Marco | 1.68E-04 | 5.08E-01 | 4.05E-08 | 7.21E-05 |
Oasl2 | 3.47E-05 | 4.56E-01 | 3.32E-15 | 4.73E-11 |
Arhgef37 | 6.29E-05 | 4.56E-01 | 4.25E-10 | 3.03E-06 |
Tppp3 | 2.21E-04 | 5.08E-01 | 4.18E-09 | 1.19E-05 |
Irgm1 | 8.33E-04 | 5.36E-01 | 1.21E-05 | 5.94E-03 |
Slfn5 | 3.50E-04 | 5.11E-01 | 1.43E-07 | 2.26E-04 |
Ifi206 | 6.99E-04 | 5.36E-01 | 9.79E-06 | 5.16E-03 |
Downregulated genes | ||||
Zdhhc1 | 3.04E-04 | 5.11E-01 | 8.59E-01 | 1.00 |
rsc1a1 | 5.39E-04 | 5.36E-01 | not found | not found |