Table 1.
Qualifying variants in the top 5 significant genes in the asymptomatic cohort
Variant | Gene | rsID | Variant Effect | MAF (NFE Population)a | CADD Score | MutationTaster | M-CAP score | No of Heterozygotes |
---|---|---|---|---|---|---|---|---|
p.(Ser109Cys) | MASP1 | NA | Missense SNV | 0 | 27.2 | Disease | 0.03738 | 1 |
p.(Arg677Cys) | MASP1 | rs368168610 | Missense SNV | 0.00003434 | 29 | Disease | 0.231827 | 1 |
p.(Tyr244Cys) | MASP1 | rs28945071 | Missense SNV | 0.0005 | 27.4 | Disease | 0.138472 | 1 |
p.(Val666Leu) | MASP1 | NA | Missense SNV | 0.000001804 | 33 | Disease | 0.172555 | 2 |
p.(Lys591Alafs∗14) | MASP1 | rs533160857 | Frameshift deletion | 0.00013334 | 39 | NA | NA | 3 |
p.(Ser174Leu) | COLEC11 | rs140226372 | Missense SNV | 0 | 32 | Disease | 0.070292 | 2 |
p.(Glu34Gly) | COLEC11 | NA | Missense SNV | 0 | 25.3 | Disease | 0.620558 | 4 |
p.(Asp81Gly) | COLEC10 | rs770053333 | Missense SNV | 0.000001796 | 17.21 | Disease | 0.05912 | 5 |
p.(Arg130∗) | CFHR2 | rs41313888 | Stop gain | 0.000575 | 34 | Disease | NA | 1 |
p.(Thr67Asnfs∗3) | CFHR2 | rs779257906 | Frameshift insertion | 0.000008975 | NA | NA | NA | 1 |
p.(Pro166Ser) | CD55 | rs924315999 | Missense SNV | 0.000002245 | 24.9 | Disease | 0.201836 | 1 |
p.(Cys225Arg) | CD55 | NA | Missense SNV | 0 | 23.5 | Disease | 0.645858 | 1 |
CADD, Combined Annotation Dependent Depletion; ExAC, Exome Aggregation Consortium; gnomAD, Genome Aggregation Database; MAF, minor allele frequency; M-CAP, Mendelian Clinically Applicable Pathogenicity; NA, not applicable; NFE, non-Finnish European; SNV, single-nucleotide variation.
Mean of MAF frequency in NFE population according to gnomAD, ExAC, and 1000 Genomes projects.