TABLE 3.
Mode | Affinity (kcal/mol) | Dist from RMSD l.b | Best mode RMSD u.b |
---|---|---|---|
1 | −9.4 | 0.000 | 0.000 |
2 | −9.4 | 2.139 | 4.983 |
3 | −8.8 | 1.585 | 4.703 |
4 | −8.5 | 32.442 | 36.298 |
5 | −8.3 | 31.725 | 36.355 |
6 | −7.9 | 32.060 | 36.050 |
7 | −7.8 | 29.070 | 34.847 |
8 | −7.7 | 55.447 | 59.211 |
9 | −7.7 | 28.053 | 33.501 |
The predicted binding affinity is in kcal/mol (energy). The RMSD values were calculated as related to the best mode and only used movable heavy atoms. Two variants of RMSD metrics are provided, RMSD l.b. (RMSD lower bound) and RMSD u.b. (RMSD upper bound), differing in how the atoms are matched in the distance calculation.