TABLE 4.
Structures of muropeptides from E. faecium
Peak no.b | Peptidoglycan structurec | Amt (% total)a
|
||
---|---|---|---|---|
D344 | D344 + CR064d | D344S | ||
Monomers | 41.7 | 42.0 | 33.7 | |
1 | ds-di | 0.9 | 0.7 | 0.5 |
2 | ds-tri | 6.6 | 5.8 | 4.7 |
3 | ds-tetra | 2.5 | 3.2 | 3.4 |
4 | ds-Asp-tri | 4.1 | 2.8 | 1.5 |
5 | ds-Asn-tri | 16.3 | 16.2 | 13.0 |
6 | ds-Asp-tetra | 2.7 | 3.4 | 1.5 |
7 | ds-Asn-tetra | 3.2 | 5.5 | 4.4 |
8 | ds-Asn-penta | 0.6 | 2.4 | 1.8 |
9 | ds(Ac)-Asp-tri | 1.2 | 0.5 | 0.4 |
10 | ds(Ac)-Asn-tri | 3.6 | 1.5 | 2.5 |
Dimers and trimers | 58.3 | 58.0 | 66.3 | |
11 | Bis-ds-tetra-Asn-tri | 4.5 | 6.3 | 3.2 |
12 | Bis-ds-Asp-tetra-Asn-trie | 4.3 | 3.6 | 5.2 |
13 | Bis-ds-Asn-tetra-Asn-tri | 17.1 | 18.2 | 19.6 |
14 | Bis-ds-Asp-tetra-Asn-tetrae | 1.4 | 1.6 | 1.3 |
15 | Bis-ds-(Ac)-tetra-Asn-tri | 1.1 | 1.7 | 1.1 |
16 | Bis-ds-Asn-tetra-Asn-tetra | 4.2 | 7.0 | 8.6 |
17 | Bis-ds-(Ac)-Asp-tetra-Asn-trie | 1.8 | 2.1 | 1.4 |
18 | Bis-ds-Asp-tetra-Asn-tetrae | 1.7 | 1.9 | 3.5 |
19 | Bis-ds-(Ac)-Asn-tetra-Asn-tri | 6.4 | 4.0 | 6.7 |
20 | Ter-ds-Asn-tetra-Asn-tetra-Asn-tri | 6.2 | 5.6 | 6.5 |
21 | Bis-ds-(AcX2)-Asp-tetra-Asn-trie | 2.7 | 2.5 | 4.0 |
22 | Bis-ds-(AcX2)-Asn-tetra-Asn-tri | 6.9 | 3.5 | 5.2 |
The values are presented as a percentage of the sum of all peaks presented in the table and are the means of two experiments.
Muropeptide peak designations as in reference 14.
Abbreviations: ds, disaccharide (N-acetylglucosamine-β-1.4-N-acetylmuramic acid); Bis, dimeric form; Ter, trimeric form; di, dipeptide (l-alanyl-d-isoglutamine); tri, tripeptide (l-alanyl-d-isoglutamyl-l-lysine); tetra, tetrapeptide (l-alanyl-d-isoglutamyl-l-lysyl-d-alanine); penta, pentapeptide (l-alanyl-d-isoglutamyl-l-lysyl-d-alanyl-d-alanine); Asn, d-asparagine; Asp, d-aspartate; Ac, O-acetylation located on N-acetylmuramic acid; ACx2, O-acetylation on both N-acetylmuramic acids of the dimer.
D344 was grown in presence of 64 μg of ceftriaxone per ml (CRO64).
Assignment of Asp and Asn residues to either stem peptide is arbitrary.