Table 1.
Hypothetical proteins of the symbiosis island of Bradyrhizobium japonicum strain SEMIA 5079 (= CPAC 15) annotated in this study
| Protein ID | Protein | Subcellular localization | SOSUIa | Signal Pepb | Molecular Function | Biological Process |
|---|---|---|---|---|---|---|
| BJS_07536 | Squalene-hopene cyclase | Cytoplasmic | S | NSP | cyclizes squalene into hopanoid products | hopanoid (triterpenoid) metabolism |
| BJS_07605 | 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferase | Cytoplasmic | S | NSP | methyltransferase; zinc ion binding | methionine biosynthesis |
| BJS_07621 | Glutathione-dependent formaldehyde-activating (GFA) enzyme | Cytoplasmic | S | NSP | carbon-sulfur lyase activity | metabolic process |
| BJS_07647 | Porin protein | Outer Membrane | 1 TMH | SP | non-specific channels for small hydrophilic molecules | molecules transport |
| BJS_08160 | Non-homologous end joining protein Ku | Cytoplasmic | S | NSP | DNA binding | DNA recombination |
| BJS_08216 | Hydrogenase maturation factor HypA | Cytoplasmic | S | NSP | nickel cation binding | cellular protein modification process |
| BJS_08240 | Peptidase U49 | Cytoplasmic | 1 TMH | NSP | peptidase cleaves domain I of the elongation factor | catalytic mechanism |
| BJS_08251 | Trypsin-like peptidase | Cytoplasmic | S | NSP | serine-type endopeptidase activity | proteolysis |
| BJS_08254 | Trypsin-like peptidase | Extracellular | S | SP | serine-type endopeptidase activity | proteolysis |
|
BJS_08258 ( aspC ) |
Aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme | Cytoplasmic | S | NSP | pyridoxal phosphate binding | biosynthetic process |
| BJS_08261 | Succinate-semialdehyde dehydrogenase | Cytoplasmic | S | NSP | succinate-semialdehyde dehydrogenase | oxidation-reduction process |
| BJS_08267 | Major Facilitator transporter | Inner Membrane | 11 TMH | NSP | transmembrane transporter activity | molecules transport |
| BJS_08317 | HxlR-type HTH transcription regulator | Cytoplasmic | S | NSP | transcription regulator | amino acid biosynthesis |
| BJS_08523 | 7-cyano-7-deazaguanine synthase | Cytoplasmic | 1 TMH | NSP | ATP-dependent conversion of 7-carboxy-7-deazaguanine to 7-cyano-7-deazaguanine | queuosine biosynthetic process |
| BJS_08774 | Acetylcholinesterase | Cytoplasmic | 1 TMH | NSP | acetylcholinesterase tetramerization | glycerophospholipid metabolism |
a Prediction of soluble protein (S) or transmembrane helices structures (TMH); b Prediction of peptide signal, secreted protein (SP) or no-secreted protein (NSP)