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. 2022 May 5;22:122. doi: 10.1186/s12866-022-02527-9

Table 2.

Prediction of virulence factors and protein secretion systems in the 14 hypothetical and the AspC proteins of the symbiosis island of Bradyrhizobium japonicum strain SEMIA 5079 (= CPAC 15) annotated in this study

Protein ID VICMpred VirulentPred EffectiveDB
EffectiveT3 EffectiveCCBD T4SEpre EffectiveELD
BJS_07536 Information and storage Non-Virulent - - - -
BJS_07605 Cellular process Non-Virulent - - - PF08267/PF01717
BJS_07621 Cellular process Non-Virulent 1 (high confidence) - - PF04828
BJS_07647 Metabolism Molecule Non-Virulent - - - -
BJS_08160 Metabolism Molecule Non-Virulent - - - PF02735
BJS_08216 Metabolism Molecule Non-Virulent - - - -
BJS_08240 Virulence factors Non-Virulent - - - -
BJS_08251 Cellular process Non-Virulent - - - PF13365
BJS_08254 Cellular process Virulent 1 (high confidence) - - PF13365

BJS_08258

(AspC)

Metabolism Molecule Non-Virulent 1 (high confidence) - - PF00155
BJS_08261 Metabolism Molecule Non-Virulent - - - PF00171
BJS_08267 Metabolism Molecule Non-Virulent - - - PF07690
BJS_08317 Information and storage Non-Virulent - - - -
BJS_08523 Cellular process Non-Virulent - - - -
BJS_08774 Cellular process Virulent - - - -