Table 1.
Genome-wide genealogy inference programs compared.
Program | Samples topologies | Samples coalescence times | Supports demographic model | Scalability (number of genomes) | Outputs full ARG | Supports unphased data |
---|---|---|---|---|---|---|
ARGweaver | Yes | Yes | No | ∼50 | Yes | Yes |
ARGweaver-Da | Yes | Yes | Yes | ∼50 | Yes | Yes |
Relate | No | Yes | No | No | No | |
tsinfer+tsdate | No | No | No | No | No |