Table 4.
Common differential genes in MeRIP-seq and RNA-seq.
| Transcript id | Peak length | P value | Regulation | Gene name | Location |
|---|---|---|---|---|---|
| XLOC_003562 | 68 | 1.33024E-08 | up & hyper | HDAC9 | intron sense-overlapping |
| XLOC_006040 | 17 | 1.26006E-06 | up & hyper | ― | intergenic |
| XLOC_007199 | 282 | 4.89894E-07 | up & hyper | CMPK2 | exon sense-overlapping |
| XLOC_017992 | 239 | 4.69617E-07 | up & hyper | ― | intergenic |
| XLOC_024250 | 910 | 5.69015E-06 | up & hyper | ― | intergenic |
| LOC112531149 | 199 | 1.46458E-06 | up & hyper | ― | intergenic |
| LOC101751016 | 105 | 6.27978E-08 | up & hyper | ― | intergenic |
| LOC112531349 | 996 | 2.90995E-06 | up & hyper | ― | intergenic |
| LOC107052842 | 339 | 6.78792E-08 | up & hyper | ― | intergenic |
| LOC112532710 | 199 | 4.56211E-06 | up & hyper | ― | intergenic |
| LOC107054147 | 559 | 2.23371E-06 | up & hyper | MINDY4B | natural antisense |
| LOC107054686 | 419 | 4.92186E-06 | up & hyper | ― | intergenic |
| LOC107052235 | 239 | 7.71317E-13 | dn & hypo | ― | intergenic |
| LOC107053315 | 162 | 2.75528E-13 | dn & hypo | ATOH8 | natural antisense |
| LOC101751658 | 64 | 2.33973E-06 | dn & hypo | ― | intergenic |
| LOC112532116 | 329 | 7.1866E-07 | dn & hypo | SOX7 | natural antisense |
| LOC100859478 | 754 | 5.96176E-08 | dn & hypo | LOC100859478 | exon sense-overlapping |
up & hyper, upregulated and hypermethylated genes; dn & hypo, down-regulated and hypomethylated genes.