TABLE 4.
DNA docking results ± SD for (1), (2), free ligands, and the anticancer drugs to DNA (kcal mol−1)
| (1) | (2) | (SB) | (BTZ) | Cyclophosphamide | Doxorubicin | 5‐FU | |
|---|---|---|---|---|---|---|---|
| Estimated free binding energy[ a ] | −10.10 ± 0.01 | −8.39 ± 0.01 | −7.95 ± 0.14 | −6.37 ± 0.01 | −4.66 ± 0.18 | −10.90 ± 0.06 | −7.00 ± 0.01 |
| Final intermolecular energy | −11.29 ± 0.01 | −9.29 ± 0.01 | −9.74 ± 0.14 | −6.66 ± 0.01 | −6.57 ± 0.09 | −14.18 ± 0.05 | −7.60 ± 0.01 |
| vdW + Hbond + desolve energy | −9.10 ± 0.01 | −6.53 ± 0.01 | −6.67 ± 0.31 | −6.64 ± 0.01 | −6.33 ± 0.19 | −11.77 ± 0.27 | −2.22 ± 0.01 |
| Electrostatic energy | −2.19 ± 0.01 | −2.75 ± 0.01 | −3.07 ± 0.46 | −0.02 ± 0.01 | −0.12 ± 0.01 | −2.41 ± 0.30 | −5.38 ± 0.01 |
| Final total internal energy | −1.27 ± 0.02 | −1.36 ± 0.01 | −0.97 ± 0.45 | −0.21 ± 0.01 | −0.64 ± 0.18 | −3.71 ± 0.15 | 0.49 ± 0.01 |
| Torsional free energy | 1.19 ± 0.01 | 0.89 ± 0.01 | 1.79 ± 0.01 | 0.3 ± 0.01 | 1.79 ± 0.01 | 3.28 ± 0.01 | 0.6 ± 0.01 |
| Unbound system's energy | −1.27 ± 0.02 | −1.36 ± 0.01 | −0.97 ± 0.45 | −0.21 ± 0.01 | −0.64 ± 0.18 | −3.71 ± 0.15 | 0.49 ± 0.01 |
Abbreviation: 5‐FU, 5‐fluorouracil.
ΔG binding = ΔG vdW + hb + desolve + ΔG elec + ΔG total + ΔG tor − ΔG unb.