Skip to main content
. 2022 Feb 24;36(5):e6639. doi: 10.1002/aoc.6639

TABLE 7.

The drug–receptor residue interactions between compounds and 1emr

Compound Drug residue Receptor residue Type of H for drugs Type of H for receptor Interaction Distance (Å)
(1) NH2 complex Val88:O H‐Don. H‐Acc. H. bond 1.88

H16 aldehyde

O aldehyde

H‐Don., H‐Acc. H. bond 2.26
C aldehyde ALA120:O H‐Don. H‐Acc. C–H. bond 3.75
Aldehyde ring ALA120 Alkyl Alkyl Alkyl Hyd. 4.59
Br ALA120 Alkyl Alkyl Alkyl Hyd. 3.26
Pyridine ring LEU127 Alkyl Alkyl Alkyl Hyd. 4.86
(2) NH2 complex VAL145:O H‐Don. H‐Acc. H. bond 2.15

H19 aldehyde

O aldehyde

H‐Don., H‐Acc. H. bond 2.14

H19 aldehyde

N aldehyde

H‐Don., H‐Acc. H. bond 2.21
H18 aldehyde ASP67:OD2 H‐Don. H‐Acc. H. bond 1.70
O aldehyde PRO70:CD H‐Acc. H‐Don. C–H. bond 3.63
BTZ ring PRO69 Alkyl Alkyl Alkyl Hyd. 3.69
Ring aldehyde Pro70 Alkyl Alkyl Alkyl Hyd. 3.66
BTZ ring ARG86 Alkyl Alkyl Alkyl Hyd. 5.16
BTZ ring VAL145 Alkyl Alkyl Alkyl Hyd. 5.27
C complex PRO69 Alkyl Alkyl Alkyl Hyd. 4.49
CH3 BTZ PRO70 Alkyl Alkyl Alkyl Hyd. 4.65
CH3 BTZ ARG86 Alkyl Alkyl Alkyl Hyd. 3.24
BTZ ring TYR90 Alkyl Pi‐orbital π‐Alkyl Hyd. 5.14
(SB) O ligand ARG86:HE H‐Acc. H‐Don. H. bond 1.74
O ligand ARG86:HH11 H‐Acc. H‐Don. H. bond 1.80
NH2 ligand ASP67:OD2 H‐Don. H‐Acc. H. bond 1.90
NH2 ligand A:THR66:O H‐Don. H‐Acc. H. bond 1.95
H ligand N ligand H‐Don. H‐Acc. H. bond 2.02
C ligand ASP67:OD2 H‐Don. H‐Acc. C–H. bond 2.89
C ligand PHE68:O H‐Don. H‐Acc. C–H. bond 3.71
Ring of ligand PRO69:CA π‐Orbital C–H π‐σ‐Hyd. 3.61
Ring of ligand PHE68:C,O;PRO69:N π‐Orbital Amide Amide‐π‐Hyd. 4.73
Br ligand PRO69 Alkyl Alkyl Alkyl Hyd. 3.75
Br ligand ARG86 Alkyl Alkyl Alkyl Hyd. 4.90
Br ligand A:VAL145 Alkyl Alkyl Alkyl Hyd. 4.63
Br ligand A:TYR90 Alkyl π‐Orbital π‐Alkyl Hyd. 4.91
Ring of ligand A:PRO70 π‐Orbital Alkyl π‐Alkyl Hyd. 4.47
Ring of ligand A:ARG86 π‐Orbital Alkyl π‐Alkyl Hyd. 5.48
(BTZ) S ligand THR66:HN H‐Acc. H‐Don. H. bond 2.85
S ligand ASN97:HD21 H‐Acc. H‐Don. H. bond 2.73
Ring of ligand A:SER94:HG π‐Orbital H‐Don. π‐Don. H. bond 2.76
Ring of ligand VAL65:CG1 π‐Orbital C–H π‐σ‐Hyd. 3.79
C ligand ILE98 Alkyl Alkyl Alkyl Hyd. 4.03
C ligand LEU166 Alkyl Alkyl Alkyl Hyd. 5.14
C ligand VAL65 Alkyl Alkyl Alkyl Hyd. 3.93
C ligand LEU162 Alkyl Alkyl Alkyl Hyd. 4.95
Ring of ligand PRO149 π‐Orbital Alkyl π‐Alkyl Hyd. 5.06
Ring of ligand LEU166 π‐Orbital Alkyl π‐Alkyl Hyd. 4.93
Ring of ligand PRO149 π‐Orbital Alkyl π‐Alkyl Hyd. 5.28
Ring of ligand A:LEU162 π‐Orbital Alkyl π‐Alkyl Hyd. 4.94
Lenalidomide O LYS171:HZ3 H‐Acc. H‐Don. H. bond 3.06
H ASN35:O H‐Don. H‐Acc. H. bond 1.96
H SER175:OG H‐Don. H‐Acc. H. bond 1.79
H GLN172:O H‐Don. H‐Acc. H. bond 2.22
Ph ring Lys171 Pi‐orbital Alkyl π‐Alkyl Hyd. 4.67
5‐FU H GLU77:OE1 H‐Don. H‐Acc. H. bond 1.76
H PHE181:OXT H‐Don. H‐Acc. H. bond 1.77
H4 GLU77:OE1 H‐Don. H‐Acc. H. bond 2.08
H5 PHE181:OXT H‐Don. H‐Acc. H. bond 1.78

Abbreviation: 5‐FU, 5‐fluorouracil.