TABLE 7.
The drug–receptor residue interactions between compounds and 1emr
Compound | Drug residue | Receptor residue | Type of H for drugs | Type of H for receptor | Interaction | Distance (Å) |
---|---|---|---|---|---|---|
(1) | NH2 complex | Val88:O | H‐Don. | H‐Acc. | H. bond | 1.88 |
H16 aldehyde O aldehyde |
— | H‐Don., H‐Acc. | — | H. bond | 2.26 | |
C aldehyde | ALA120:O | H‐Don. | H‐Acc. | C–H. bond | 3.75 | |
Aldehyde ring | ALA120 | Alkyl | Alkyl | Alkyl Hyd. | 4.59 | |
Br | ALA120 | Alkyl | Alkyl | Alkyl Hyd. | 3.26 | |
Pyridine ring | LEU127 | Alkyl | Alkyl | Alkyl Hyd. | 4.86 | |
(2) | NH2 complex | VAL145:O | H‐Don. | H‐Acc. | H. bond | 2.15 |
H19 aldehyde O aldehyde |
— | H‐Don., H‐Acc. | — | H. bond | 2.14 | |
H19 aldehyde N aldehyde |
— | H‐Don., H‐Acc. | — | H. bond | 2.21 | |
H18 aldehyde | ASP67:OD2 | H‐Don. | H‐Acc. | H. bond | 1.70 | |
O aldehyde | PRO70:CD | H‐Acc. | H‐Don. | C–H. bond | 3.63 | |
BTZ ring | PRO69 | Alkyl | Alkyl | Alkyl Hyd. | 3.69 | |
Ring aldehyde | Pro70 | Alkyl | Alkyl | Alkyl Hyd. | 3.66 | |
BTZ ring | ARG86 | Alkyl | Alkyl | Alkyl Hyd. | 5.16 | |
BTZ ring | VAL145 | Alkyl | Alkyl | Alkyl Hyd. | 5.27 | |
C complex | PRO69 | Alkyl | Alkyl | Alkyl Hyd. | 4.49 | |
CH3 BTZ | PRO70 | Alkyl | Alkyl | Alkyl Hyd. | 4.65 | |
CH3 BTZ | ARG86 | Alkyl | Alkyl | Alkyl Hyd. | 3.24 | |
BTZ ring | TYR90 | Alkyl | Pi‐orbital | π‐Alkyl Hyd. | 5.14 | |
(SB) | O ligand | ARG86:HE | H‐Acc. | H‐Don. | H. bond | 1.74 |
O ligand | ARG86:HH11 | H‐Acc. | H‐Don. | H. bond | 1.80 | |
NH2 ligand | ASP67:OD2 | H‐Don. | H‐Acc. | H. bond | 1.90 | |
NH2 ligand | A:THR66:O | H‐Don. | H‐Acc. | H. bond | 1.95 | |
H ligand | N ligand | H‐Don. | H‐Acc. | H. bond | 2.02 | |
C ligand | ASP67:OD2 | H‐Don. | H‐Acc. | C–H. bond | 2.89 | |
C ligand | PHE68:O | H‐Don. | H‐Acc. | C–H. bond | 3.71 | |
Ring of ligand | PRO69:CA | π‐Orbital | C–H | π‐σ‐Hyd. | 3.61 | |
Ring of ligand | PHE68:C,O;PRO69:N | π‐Orbital | Amide | Amide‐π‐Hyd. | 4.73 | |
Br ligand | PRO69 | Alkyl | Alkyl | Alkyl Hyd. | 3.75 | |
Br ligand | ARG86 | Alkyl | Alkyl | Alkyl Hyd. | 4.90 | |
Br ligand | A:VAL145 | Alkyl | Alkyl | Alkyl Hyd. | 4.63 | |
Br ligand | A:TYR90 | Alkyl | π‐Orbital | π‐Alkyl Hyd. | 4.91 | |
Ring of ligand | A:PRO70 | π‐Orbital | Alkyl | π‐Alkyl Hyd. | 4.47 | |
Ring of ligand | A:ARG86 | π‐Orbital | Alkyl | π‐Alkyl Hyd. | 5.48 | |
(BTZ) | S ligand | THR66:HN | H‐Acc. | H‐Don. | H. bond | 2.85 |
S ligand | ASN97:HD21 | H‐Acc. | H‐Don. | H. bond | 2.73 | |
Ring of ligand | A:SER94:HG | π‐Orbital | H‐Don. | π‐Don. H. bond | 2.76 | |
Ring of ligand | VAL65:CG1 | π‐Orbital | C–H | π‐σ‐Hyd. | 3.79 | |
C ligand | ILE98 | Alkyl | Alkyl | Alkyl Hyd. | 4.03 | |
C ligand | LEU166 | Alkyl | Alkyl | Alkyl Hyd. | 5.14 | |
C ligand | VAL65 | Alkyl | Alkyl | Alkyl Hyd. | 3.93 | |
C ligand | LEU162 | Alkyl | Alkyl | Alkyl Hyd. | 4.95 | |
Ring of ligand | PRO149 | π‐Orbital | Alkyl | π‐Alkyl Hyd. | 5.06 | |
Ring of ligand | LEU166 | π‐Orbital | Alkyl | π‐Alkyl Hyd. | 4.93 | |
Ring of ligand | PRO149 | π‐Orbital | Alkyl | π‐Alkyl Hyd. | 5.28 | |
Ring of ligand | A:LEU162 | π‐Orbital | Alkyl | π‐Alkyl Hyd. | 4.94 | |
Lenalidomide | O | LYS171:HZ3 | H‐Acc. | H‐Don. | H. bond | 3.06 |
H | ASN35:O | H‐Don. | H‐Acc. | H. bond | 1.96 | |
H | SER175:OG | H‐Don. | H‐Acc. | H. bond | 1.79 | |
H | GLN172:O | H‐Don. | H‐Acc. | H. bond | 2.22 | |
Ph ring | Lys171 | Pi‐orbital | Alkyl | π‐Alkyl Hyd. | 4.67 | |
5‐FU | H | GLU77:OE1 | H‐Don. | H‐Acc. | H. bond | 1.76 |
H | PHE181:OXT | H‐Don. | H‐Acc. | H. bond | 1.77 | |
H4 | GLU77:OE1 | H‐Don. | H‐Acc. | H. bond | 2.08 | |
H5 | PHE181:OXT | H‐Don. | H‐Acc. | H. bond | 1.78 |
Abbreviation: 5‐FU, 5‐fluorouracil.