Table 2.
Reference genome alignment read statistics
| ID | TOTAL READS | MAPPED READS | UNIQ MAPPED READS | MULTIPLE MAPPED READS | Reads Map to ‘+’ | Reads Map to ‘-’ |
|---|---|---|---|---|---|---|
| An-1 | 84,696,486 | 82,034,935(96.86%) | 80,090,317(94.56%) | 1,944,618(2.30%) | 40,493,216(47.81%) | 40,734,236(48.09%) |
| An-2 | 74,116,322 | 71,933,700(97.06%) | 70,038,566(94.50%) | 1,895,134(2.56%) | 35,414,125(47.78%) | 35,686,086(48.15%) |
| An-3 | 78,545,638 | 75,901,736(96.63%) | 74,231,526(94.51%) | 1,670,210(2.13%) | 37,522,695(47.77%) | 37,727,620(48.03%) |
| Cn-1 | 88,865,650 | 85,667,796(96.40%) | 83,995,291(94.52%) | 1,672,505(1.88%) | 42,335,644(47.64%) | 42,590,460(47.93%) |
| Cn-2 | 74,453,316 | 72,186,065(96.95%) | 70,795,057(95.09%) | 1,391,008(1.87%) | 35,743,062(48.01%) | 35,899,322(48.22%) |
| Cn-3 | 73,428,812 | 71,309,587(97.11%) | 69,906,385(95.20%) | 1,403,202(1.91%) | 35,282,068(48.05%) | 35,445,462(48.27%) |
| Tn-1 | 91,640,952 | 88,875,344(96.98%) | 87,231,194(95.19%) | 1,644,150(1.79%) | 43,958,663(47.97%) | 44,189,339(48.22%) |
| Tn-2 | 84,513,820 | 82,006,488(97.03%) | 80,269,594(94.98%) | 1,736,894(2.06%) | 40,500,070(47.92%) | 40,726,197(48.19%) |
| Tn-3 | 82,937,808 | 80,546,632(97.12%) | 79,025,282(95.28%) | 1,521,350(1.83%) | 39,910,813(48.12%) | 40,074,042(48.32%) |