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. 2022 May 7;22:512. doi: 10.1186/s12885-022-09580-7

Table 2.

Significant associations of gene expression and logGI50 of Indian Natural Products in the NCI-60 cell line panel

NSC Gene Spearman ρ Original p value FDR adjusted p value Dendrogram subtree Active molecule
328426 MYB -0.66 1.7e-08 0.004 Subtree 1 Phyllanthoside
328426 BEND7 0.65 2.8e-08 0.005 Subtree 1 Phyllanthoside
308606 ZBTB33 -0.67 1.0e-07 0.012 Subtree 1 Cucurbitacin D
328426 NHS 0.62 2.0e-07 0.014 Subtree 1 Phyllanthoside
328426 WWC1 0.61 3.0e-07 0.019 Subtree 1 Phyllanthoside
94743 TRMT112 0.65 4.0e-07 0.022 Subtree 1 Cucurbitacin A
328426 RBMS2 0.60 5.0e-07 0.022 Subtree 1 Phyllanthoside
342443 EHD2 0.66 6.0e-07 0.025 Subtree 1 S3’-desacetyl-phyllanthoside
328426 PROSER2 0.60 8.0e-07 0.027 Subtree 1 Phyllanthoside
328426 SMAP2 -0.60 8.0e-07 0.027 Subtree 1 Phyllanthoside
328426 BAGE -0.59 8.0e-07 0.027 Subtree 1 Phyllanthoside
328426 C6orf89 -0.59 9.0e-07 0.027 Subtree 1 Phyllanthoside
328426 EGFR 0.59 1.0e-06 0.027 Subtree 1 Phyllanthoside
328426 PDLIM1 0.59 1.0e-06 0.027 Subtree 1 Phyllanthoside
94743 ZNF48 0.63 1.0e-06 0.027 Subtree 1 Cucurbitacin A
328426 CNPPD1 -0.59 1.1e-06 0.029 Subtree 1 Phyllanthoside
342443 CLMP 0.65 1.1e-06 0.029 Subtree 1 S3’-desacetyl-phyllanthoside
143925 ATP1A1 0.59 1.2e-06 0.030 Subtree 1 Pekilocerin A
342443 ADAM9 0.64 1.4e-06 0.031 Subtree 1 S3’-desacetyl-phyllanthoside
328426 MON1A -0.58 1.4e-06 0.031 Subtree 1 Phyllanthoside
328426 ZNF319 0.58 1.6e-06 0.033 Subtree 1 Phyllanthoside
328426 HKDC1 0.58 1.8e-06 0.036 Subtree 1 Phyllanthoside
342443 CD151 0.64 2.0e-06 0.037 Subtree 1 S3’-desacetyl-phyllanthoside
328426 AJUBA 0.58 2.1e-06 0.038 Subtree 1 Phyllanthoside
112167 TLN1 -0.62 2.3e-06 0.040 Subtree 1 Elatericin B
328426 HESX1 -0.57 2.4e-06 0.040 Subtree 1 Phyllanthoside
328426 MMP24 0.57 2.5e-06 0.042 Subtree 1 Phyllanthoside
328426 TJP1 0.57 2.7e-06 0.043 Subtree 1 Phyllanthoside
328426 TNFRSF12A 0.57 2.7e-06 0.043 Subtree 1 Phyllanthoside
342443 ZFP36L1 0.63 2.9e-06 0.043 Subtree 1 S3’-desacetyl-phyllanthoside
342443 NNMT 0.63 3.0e-06 0.043 Subtree 1 S3’-desacetyl-phyllanthoside
328426 BIN1 0.57 3.0e-06 0.043 Subtree 1 Phyllanthoside
342443 MTCL1 0.63 3.1e-06 0.043 Subtree 1 S3’-desacetyl-phyllanthoside
342443 TNFRSF1A 0.62 3.8e-06 0.046 Subtree 1 S3’-desacetyl-phyllanthoside
342443 LOC101241902 0.62 3.8e-06 0.046 Subtree 1 S3’-desacetyl-phyllanthoside
328426 GOLGA6L5P 0.56 3.9e-06 0.046 Subtree 1 Phyllanthoside
521777 SLAMF6 0.56 3.9e-06 0.046 Subtree 1 Elatericin B
342443 UCKL1 -0.62 3.9e-06 0.046 Subtree 1 S3’-desacetyl-phyllanthoside
143925 ILF2P1 -0.56 4.0e-06 0.046 Subtree 1 Pekilocerin A
328426 NUAK2 0.56 4.0e-06 0.046 Subtree 1 Phyllanthoside
328426 PUS3 -0.56 4.1e-06 0.046 Subtree 1 Phyllanthoside
328426 C2CD2L -0.56 4.3e-06 0.046 Subtree 1 Phyllanthoside
342443 NRP1 0.62 4.3e-06 0.046 Subtree 1 S3’-desacetyl-phyllanthoside
328426 LRRN4 0.56 4.3e-06 0.046 Subtree 1 Phyllanthoside
328426 SLC35F3 0.56 4.4e-06 0.046 Subtree 1 Phyllanthoside
328426 ZNF639 -0.56 4.6e-06 0.046 Subtree 1 Phyllanthoside
143925 FNIP1 0.56 4.7e-06 0.046 Subtree 1 Pekilocerin A
94743 ZNF629 0.60 4.8e-06 0.046 Subtree 1 Cucurbitacin A
328426 FRAT2 -0.56 5.6e-06 0.048 Subtree 1 Phyllanthoside
342443 NR2F2 0.61 5.8e-06 0.049 Subtree 1 S3’-desacetyl-phyllanthoside
342443 ITGB1 0.61 5.9e-06 0.049 Subtree 1 S3’-desacetyl-phyllanthoside
328426 CLDN1 0.56 5.9e-06 0.049 Subtree 1 Phyllanthoside
844 ZNF823 0.65 5.0e-07 0.022 Subtree 2 Nesol
62794 FOXN4 -0.62 1.2e-06 0.030 Subtree 2 Beta carotene
327430 OGFOD2 -0.64 1.7e-06 0.035 Subtree 2 Resveratrol
90487 SDHC 0.57 3.6e-06 0.046 Subtree 2 Lupeol
643160 LCP1 -0.62 4.0e-06 0.046 Subtree 2 3-Bromo-4-dimethylamino-alpha-benzoyl cinnamonitrite
844 PBX4 0.60 4.2e-06 0.046 Subtree 2 Nesol
90487 PFKFB2 0.56 5.3e-06 0.048 Subtree 2 Lupeol
619043 KIR2DL2 -0.63 5.6e-06 0.049 Subtree 2 Phyllanthin
236613 SLC7A11 0.79 1.0e-13 0.000 Subtree 3 Plumbagin
32982 ATAD3B -0.67 1.3e-08 0.003 Subtree 3 Curcumin
309909 PDCD11 -0.66 2.3e-08 0.005 Subtree 3 Nimbolide
32982 HNRNPR -0.66 3.0e-08 0.005 Subtree 3 Curcumin
309909 RPL34P6 -0.64 1.0e-07 0.009 Subtree 3 Nimbolide
32982 RPL11 -0.64 1.0e-07 0.012 Subtree 3 Curcumin
32982 PNRC2 -0.64 1.0e-07 0.012 Subtree 3 Curcumin
236613 HDHD2 -0.63 1.0e-07 0.013 Subtree 3 Plumbagin
309909 RPL34 -0.63 1.0e-07 0.013 Subtree 3 Nimbolide
309909 HNRNPA1P55 -0.63 2.0e-07 0.014 Subtree 3 Nimbolide
87868 NOLC1 -0.68 2.0e-07 0.014 Subtree 3 Phenethyl mustard oil
87868 NPM3 -0.68 2.0e-07 0.014 Subtree 3 Phenethyl mustard oil
236613 NR2F1 0.62 2.0e-07 0.014 Subtree 3 Plumbagin
742021 ERICH1 -0.62 2.0e-07 0.017 Subtree 3 Curcumin tri adamantylaminoethylcarbonate
87868 SRPK1 -0.67 3.0e-07 0.018 Subtree 3 Phenethyl mustard oil
309909 RPS10P2 -0.62 3.0e-07 0.018 Subtree 3 Nimbolide
87868 RBMXP1 -0.67 3.0e-07 0.018 Subtree 3 Phenethyl mustard oil
742020 RPL21P134 -0.61 3.0e-07 0.018 Subtree 3 Ethoxycurcumin trithiadiazolaminomethylcarbonte
705537 C5orf15 -0.63 4.0e-07 0.022 Subtree 3 Daturaolone
742022 CCDC149 0.61 4.0e-07 0.022 Subtree 3 Curcumin tri trithiadiazolaminoethylcarbonate
742020 RPL13AP3 -0.61 5.0e-07 0.022 Subtree 3 Ethoxycurcumin trithiadiazolaminomethylcarbonte
87868 ADAT2 -0.66 5.0e-07 0.022 Subtree 3 Phenethyl mustard oil
87868 HIF1A 0.66 5.0e-07 0.022 Subtree 3 Phenethyl mustard oil
236613 SLC7A11-AS1 0.60 5.0e-07 0.022 Subtree 3 Plumbagin
32982 SPEN -0.60 7.0e-07 0.027 Subtree 3 Curcumin
236613 ACTN4P1 0.60 7.0e-07 0.027 Subtree 3 Plumbagin
643769 SMARCC1 -0.65 7.0e-07 0.027 Subtree 3 O-Bromo-alpha-benzoyl cinnamonitrile
643769 RPSAP56 -0.65 7.0e-07 0.027 Subtree 3 O-Bromo-alpha-benzoyl cinnamonitrile
87868 RPL10AP2 -0.65 8.0e-07 0.027 Subtree 3 Phenethyl mustard oil
87868 HNRNPA1P64 -0.65 8.0e-07 0.027 Subtree 3 Phenethyl mustard oil
87868 RPL34P18 -0.65 8.0e-07 0.027 Subtree 3 Phenethyl mustard oil
32982 SRRM1 -0.60 8.0e-07 0.027 Subtree 3 Curcumin
643023 FBXL2 0.66 8.0e-07 0.027 Subtree 3 Alpha-Phenyl-2,5-dimethoxy-alpha-cinnamonitrile
742020 RSL24D1 -0.59 9.0e-07 0.027 Subtree 3 Ethoxycurcumin trithiadiazolaminomethylcarbonte
236613 G6PD 0.59 9.0e-07 0.027 Subtree 3 Plumbagin
87868 HNRNPA1P55 -0.65 1.0e-06 0.027 Subtree 3 Phenethyl mustard oil
309909 NPM3 -0.60 1.0e-06 0.027 Subtree 3 Nimbolide
742022 PFN4 0.59 1.0e-06 0.027 Subtree 3 Curcumin tri trithiadiazolaminoethylcarbonate
87868 RPS4XP8 -0.64 1.0e-06 0.027 Subtree 3 Phenethyl mustard oil
87868 RPS4XP1 -0.64 1.2e-06 0.030 Subtree 3 Phenethyl mustard oil
309909 RPS10P5 -0.59 1.2e-06 0.030 Subtree 3 Nimbolide
643023 ETNK2 0.65 1.4e-06 0.031 Subtree 3 Alpha-Phenyl-2,5-dimethoxy-alpha-cinnamonitrile
742020 HNRNPA1P4 -0.59 1.4e-06 0.031 Subtree 3 Ethoxycurcumin trithiadiazolaminomethylcarbonte
309909 HNRNPA1L2 -0.59 1.4e-06 0.031 Subtree 3 Nimbolide
742019 ITGAV 0.59 1.4e-06 0.031 Subtree 3 Ethoxycurcumin tribenzimidazolmethylcarbonte
742020 RPL27AP -0.58 1.4e-06 0.031 Subtree 3 Ethoxycurcumin trithiadiazolaminomethylcarbonte
643769 RPSA -0.64 1.5e-06 0.032 Subtree 3 O-Bromo-alpha-benzoyl cinnamonitrile
742019 RPL21P44 -0.58 1.5e-06 0.032 Subtree 3 Ethoxycurcumin tribenzimidazolmethylcarbonte
236613 SRXN1 0.58 1.7e-06 0.034 Subtree 3 Plumbagin
365798 TSKU 0.64 1.8e-06 0.036 Subtree 3 Piceatannol
705537 SGF29 0.60 1.8e-06 0.036 Subtree 3 Daturaolone
742022 PDCD11 -0.58 1.9e-06 0.036 Subtree 3 Curcumin tri trithiadiazolaminoethylcarbonate
87868 RPS4XP2 -0.63 1.9e-06 0.036 Subtree 3 Phenethyl mustard oil
32982 HDAC10 -0.58 1.9e-06 0.036 Subtree 3 Curcumin
742020 EEF1B2P1 -0.58 2.0e-06 0.037 Subtree 3 Ethoxycurcumin trithiadiazolaminomethylcarbonte
742019 LINC00472 0.58 2.0e-06 0.037 Subtree 3 Ethoxycurcumin tribenzimidazolmethylcarbonte
742021 HMBOX1 -0.58 2.2e-06 0.039 Subtree 3 Curcumin tri adamantylaminoethylcarbonate
309909 NOLC1 -0.58 2.2e-06 0.039 Subtree 3 Nimbolide
643023 REEP3 0.64 2.3e-06 0.040 Subtree 3 Alpha.-Phenyl-2,5-dimethoxy-alpha-cinnamonitrile
87868 RPS4XP19 -0.63 2.4e-06 0.040 Subtree 3 Phenethyl mustard oil
32982 NOC2L -0.58 2.4e-06 0.041 Subtree 3 Curcumin
309909 RPL34P18 -0.58 2.4e-06 0.041 Subtree 3 Nimbolide
87868 MYC -0.63 2.6e-06 0.043 Subtree 3 Phenethyl mustard oil
236613 ALDH3A2 0.57 2.7e-06 0.043 Subtree 3 Plumbagin
32982 RCC2P4 -0.58 2.7e-06 0.043 Subtree 3 Curcumin
32982 KHDRBS1 -0.58 2.8e-06 0.043 Subtree 3 Curcumin
32982 DFFB -0.58 2.8e-06 0.043 Subtree 3 Curcumin
87868 HNRNPA1P35 -0.62 3.0e-06 0.043 Subtree 3 Phenethyl mustard oil
643023 CAPN2 0.63 3.0e-06 0.043 Subtree 3 Alpha.-Phenyl-2,5-dimethoxy-alpha-cinnamonitrile
309909 ANLN 0.57 3.0e-06 0.043 Subtree 3 Nimbolide
32982 AHNAK2 0.57 3.1e-06 0.043 Subtree 3 Curcumin
236613 LOC344887 0.57 3.1e-06 0.043 Subtree 3 Plumbagin
309909 HNRNPA1P64 -0.57 3.2e-06 0.043 Subtree 3 Nimbolide
309909 EIF4BP9 -0.57 3.2e-06 0.043 Subtree 3 Nimbolide
309909 RPL29P7 -0.57 3.2e-06 0.043 Subtree 3 Nimbolide
742022 LOC100128816 -0.57 3.2e-06 0.043 Subtree 3 Curcumin tri trithiadiazolaminoethylcarbonate
742022 CUEDC1 0.57 3.3e-06 0.044 Subtree 3 Curcumin tri trithiadiazolaminoethylcarbonate
32982 CLIP4 0.57 3.3e-06 0.045 Subtree 3 Curcumin
112166 CRKL 0.61 3.4e-06 0.045 Subtree 3 Cucurbitacin K
236613 PGRMC1 0.57 3.4e-06 0.045 Subtree 3 Plumbagin
742019 RPL21P12 -0.57 3.5e-06 0.046 Subtree 3 Ethoxycurcumin tribenzimidazolmethylcarbonte
32982 ATAD3A -0.57 3.7e-06 0.046 Subtree 3 Curcumin
236613 LRRC8A 0.57 3.7e-06 0.046 Subtree 3 Plumbagin
236613 AFAP1 0.57 3.8e-06 0.046 Subtree 3 Plumbagin
742022 CAMSAP2 0.56 3.9e-06 0.046 Subtree 3 Curcumin tri trithiadiazolaminoethylcarbonate
236613 NEU3 -0.56 3.9e-06 0.046 Subtree 3 Plumbagin
742019 RPS11P1 -0.56 3.9e-06 0.046 Subtree 3 Ethoxycurcumin tribenzimidazolmethylcarbonte
643023 MT2P1 0.63 4.1e-06 0.046 Subtree 3 Alpha-Phenyl-2,5-dimethoxy-alpha-cinnamonitrile
309909 ACTN4P1 0.57 4.1e-06 0.046 Subtree 3 Nimbolide
309909 IKZF5 -0.57 4.2e-06 0.046 Subtree 3 Nimbolide
87868 RPL34P31 -0.61 4.2e-06 0.046 Subtree 3 Phenethyl mustard oil
742019 FIGN 0.56 4.3e-06 0.046 Subtree 3 Ethoxycurcumin tribenzimidazolmethylcarbonte
236613 ELP2 -0.56 4.4e-06 0.046 Subtree 3 Plumbagin
309909 HNRNPCP3 -0.57 4.4e-06 0.046 Subtree 3 Nimbolide
643769 RPSAP47 -0.61 4.4e-06 0.046 Subtree 3 O-Bromo-alpha-benzoyl cinnamonitrile
309909 MTPAP -0.57 4.4e-06 0.046 Subtree 3 Nimbolide
742020 RPL21P120 -0.56 4.5e-06 0.046 Subtree 3 Ethoxycurcumin trithiadiazolaminomethylcarbonte
742022 CRACR2A -0.56 4.5e-06 0.046 Subtree 3 Curcumin tri trithiadiazolaminoethylcarbonate
236613 NQO1 0.56 4.5e-06 0.046 Subtree 3 Plumbagin
643769 RPS10 -0.61 4.5e-06 0.046 Subtree 3 O-Bromo-alpha-benzoyl cinnamonitrile
705537 PDGFC -0.58 4.6e-06 0.046 Subtree 3 Daturaolone
742022 DARS -0.56 4.6e-06 0.046 Subtree 3 Curcumin tri trithiadiazolaminoethylcarbonate
236613 ANXA2P1 0.56 4.7e-06 0.046 Subtree 3 Plumbagin
309909 EIF4BP5 -0.57 4.7e-06 0.046 Subtree 3 Nimbolide
87868 PDSS1 -0.61 4.7e-06 0.046 Subtree 3 Phenethyl mustard oil
309909 RPL7AP12 -0.56 4.8e-06 0.046 Subtree 3 Nimbolide
383468 RCC2P4 -0.56 4.8e-06 0.046 Subtree 3 Andrographis Paniculata
32982 RASAL2 0.56 4.8e-06 0.046 Subtree 3 Curcumin
309909 RPL34P31 -0.56 5.0e-06 0.047 Subtree 3 Nimbolide
87868 COL4A1 0.61 5.0e-06 0.047 Subtree 3 Phenethyl mustard oil
309909 SFXN2 -0.56 5.0e-06 0.047 Subtree 3 Nimbolide
643769 HNRNPM -0.61 5.2e-06 0.048 Subtree 3 O-Bromo-alpha-benzoyl cinnamonitrile
87868 PDGFD 0.61 5.2e-06 0.048 Subtree 3 Phenethyl mustard oil
87868 RPL36AP39 -0.61 5.2e-06 0.048 Subtree 3 Phenethyl mustard oil
87868 HNRNPA1P13 -0.61 5.3e-06 0.048 Subtree 3 Phenethyl mustard oil
309909 SNORA14B -0.56 5.3e-06 0.048 Subtree 3 Nimbolide
87868 BICC1 0.61 5.4e-06 0.048 Subtree 3 Phenethyl mustard oil
87868 PRSS23 0.61 5.4e-06 0.048 Subtree 3 Phenethyl mustard oil
742022 RPL6 -0.56 5.5e-06 0.048 Subtree 3 curcumin tri trithiadiazolaminoethylcarbonate
87868 RPL34P6 -0.61 5.5e-06 0.048 Subtree 3 Phenethyl mustard oil
87868 HNRNPA1P8 -0.61 5.5e-06 0.048 Subtree 3 Phenethyl mustard oil
309909 TAF5 -0.56 5.6e-06 0.048 Subtree 3 Nimbolide
32982 PRTG 0.56 5.6e-06 0.048 Subtree 3 Curcumin
643023 ITGA3 0.62 5.7e-06 0.049 Subtree 3 Alpha.-Phenyl-2,5-dimethoxy-alpha-cinnamonitrile
643769 CTSD 0.61 5.7e-06 0.049 Subtree 3 O-Bromo-alpha-benzoyl cinnamonitrile
309909 GALNT10 0.56 5.8e-06 0.049 Subtree 3 Nimbolide
742020 TFAP4 -0.56 6.0e-06 0.050 Subtree 3 Ethoxycurcumin trithiadiazolaminomethylcarbonte
309909 RPL10AP2 -0.56 6.0e-06 0.050 Subtree 3 Nimbolide

Listed are the genes whose expression was associated with logGI50 of INPs with FDR adjusted p < 0.05. For each product, the subtree from hierarchical clustering shown in Fig. 1 is provided. The product of Ricinus communis (NSC 15384) was not included in the hierarchical clustering as its screening concentration units differed from all other INPs. ρ, Spearman correlation coefficient