Table 1.
D9 + m7GDP (PDB 7SEZ) | D9 + trinucleotide (PDB 7SF0) | |
---|---|---|
Data collection | ||
Space group | C2221 | C2221 |
Cell dimensions | ||
a, b, c (Å) | 52.55, 140.1, 75.98 | 52.74, 139.99, 76.02 |
ɑ, β, Ɣ (°) | 90, 90, 90 | 90, 90, 90 |
Resolution (Å) | 51.5–1.7 (1.761–1.7)a | 70–1.95 (2.02–1.95)a |
Rmerge | 0.05939 (2.264) | 0.08334 (1.142) |
I/σ(I) | 26.5 (2.81) | 20.86 (1.96) |
Completeness (%) | 99.83 (99.58) | 99.76 (98.39) |
Redundancy | 12.8 (12.7) | 12.6 (9.3) |
Refinement | ||
Resolution (Å) | 51.5–1.7 | 70–1.95 |
No. unique reflections | 31,249 | 20,891 |
Rwork/Rfree | 0.1935/0.2245 | 0.2010/0.2471 |
No. atoms | ||
Protein | 1,729 | 1,717 |
Ligand/ion | 38 | 32 |
Water | 198 | 169 |
B-factors | ||
Protein | 36.4 | 36.7 |
Ligand/ion | 47.0 | 47.8 |
Water | 45.1 | 42.7 |
R.M.S. deviations | ||
Bond lengths (Å) | 0.008 | 0.005 |
Bond angles (°) | 1.22 | 0.92 |
Ramachandran (%) | ||
Favored | 96 | 97 |
Allowed | 3.04 | 3 |
Outliers | 0.96 | 0 |
Each dataset was collected from a single crystal.
Values in parentheses are for the highest resolution shell.