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. Author manuscript; available in PMC: 2022 Nov 4.
Published in final edited form as: Cancer Epidemiol Biomarkers Prev. 2022 May 4;31(5):1077–1089. doi: 10.1158/1055-9965.EPI-21-1003

Figure 4.

Figure 4.

GkmExplain sequence importance scores within +/− 50 bp of the variants of interest in the 10q24.2/COX15 region. Scores are derived from SVM models in healthy and tumor primary tissue samples as well as SVM models in cell lines SW480, HCT116, COLO205. A) rs1318920 reference allele scores. B) rs1318290 alternate allele scores. C) rs1318920 alternate allele scores - reference allele scores. D) rs2300985 reference allele scores. E) rs2300985 alternate allele scores. F) rs2300985 alternate allele scores minus reference allele scores. G) Tag SNP rs11190164 reference allele scores. H) Tag SNP rs11190164 alternate allele scores. I) Tag SNP rs11190164 alternate allele scores minus reference allele scores.