TABLE 4.
MSigDB collection | Gene set name | NES | p.adj | FDR |
---|---|---|---|---|
c2.cp.v7.2.symbols.gmt [Curated] | KEGG_PATHWAYS_IN_CANCER | 1.622 | 0.009 | 0.006 |
REACTOME_SIGNALING_BY_WNT | 1.441 | 0.009 | 0.006 | |
WP_PI3KAKT_SIGNALING_PATHWAY | 1.634 | 0.009 | 0.006 | |
REACTOME_DNA_REPAIR | 1.620 | 0.009 | 0.006 | |
REACTOME_CELLULAR_SENESCENCE | 1.963 | 0.009 | 0.006 | |
REACTOME_DNA_DOUBLE_STRAND_BREAK_REPAIR | 1.759 | 0.009 | 0.006 | |
h.all.v7.2.symbols.gmt [Hallmarks] | HALLMARK_KRAS_SIGNALING_UP | 1.754 | 0.003 | 0.001 |
HALLMARK_TNFA_SIGNALING_VIA_NFKB | 2.189 | 0.003 | 0.001 | |
HALLMARK_G2M_CHECKPOINT | 1.996 | 0.003 | 0.001 | |
HALLMARK_GLYCOLYSIS | 1.603 | 0.003 | 0.001 | |
HALLMARK_HYPOXIA | 1.726 | 0.003 | 0.001 | |
HALLMARK_P53_PATHWAY | 1.483 | 0.003 | 0.001 |
NES, normalized enrichment score; p.adj, adjust p value; FDR, false discovery rate.