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. 2022 Apr 26;49(6):81. doi: 10.3892/ijmm.2022.5137

Table II.

Primers, annealing PCR and amplicon sizes of PCR products corresponding to the pathogenic variants and variants resulted deleterious by in silico analysis.

Gene variants Primer sequences (5′→3′) TM (°C) Amplicon (bp) Exon
MLH1 c.350C>T F: GTGACCCAGCAGTGAGTTTT 58 245 4
R: AGCCTCACTTTTACCCTCTCT
MSH6 c.3311_3312del F: AGCCTCACTTTTACCCTCTCT 58 398 5
R: TGGCTGACTTTTATGTAACTGTG
MSH6 c.892C>T F: TGGTGGCTCTGATGTGGAAT 59 206 4
R: TTGCTTGTTTGGTGGCTGAG
ATM c.3802delG F: TGCTACTGAACAAGGTCCCA 59 448 26
R: CTCTCTTTGCTGTGCCATCC
MLH1 c.376T>A F: GTGACCCAGCAGTGAGTTTT 58 245 4
R: ACGTACTCAAGATCTCTGCCA
EPCAM c.332A>G F: TGATGAAGGCAGAAATGAATGG 58 250 3
R: ACAAGTAGTATAGGCAGCCCC
MSH3 c.1778G>A F: CCTGGGCATTAGAGTGGGAA 58 264 13
R: TGTCCTCAAGCTGAAGAACAC
MLH3 c.470T>C F: TATGGTTTCCGAGGAGAGGC 59 232 2
R: CCAGTCTAGGGTCCATGCAT
MLH3 c.3440A>T F: TCAGTTTGTGCAGAAAGAGGT 58 250 3
R: GAGTTAGGTGGTACGATGTGT
ATM c.7475T>G F: AGGAAGGTGTGTGAATTGCA 58 465 50
R: CCTGACATCAAGGGGCTTATG
ATM c.1178G>T F: GGCAACAACAGCGAAACTCT 58 396 9
R: TGTCATGGCAATCACATATCCC
ATM c.8734A>G F: ATTAGCTGTCAAACCTCCTAACT 58 221 60
R: TGCCCAGCCCATGTAATTTT
CHEK2 c.911T>C F: TGTCTTCTGTCCAAGTGCGT 59 245 9
R: GGTCCCTCGATTTCTGCCTA
PMS2 c.1004A>G F: AAAGTGAATTTGGCTGGGCG 59 498 10
R: TGGCTGCTGACTGACATTTAGCTTG
PMS2 c.2249G>A F: TCTCAGGAAGTTTTGTGACACT 59 295 13
R: CACCCAGCCGCTATAGTTCT
PMS2 c.1253C>T F: GACCCTCTTCTCCGTCCAC 58 491 11
R: GAGAGTCCACATGTTCCTGC
MLH1 c.589-9_589-6delGTTT F: GTTTGCTGGTGGAGATAAGGT 58 392 8
R: ACGCCACAGAATCTAGGAGA
MRE11 c.1783+7A>G F: ACTTTCTCCTTCTTCTCCCTCT 59 410 15
R: TGTCAGAACTGCCTTAAAGACTG
CDH1 c.585A>C F: TTCTCTGGGAGGGATTTGGC 59 293 5
R: CCCGGTGTCAACAAGCTTC
CDH1 c.344C>T F: GAAGATTGCACCGGTCGAC 58 250 3
R: CAACAGCGAACTTCTCAGAAAA
NF1 c.4445T>C F: CTGGGTGTATCTGGTGTTGAAAA 58 486 34
R: GGATCTATAACAATCTGCAAGCC
CHEK2 c.688G>T F: CTTGAAGTGGACCCAGGAGT 58 242 6
R: TGGGAAGTTATGAAGACGTGTT

F, forward; R, reverse.