. Author manuscript; available in PMC: 2022 May 9.

Published in final edited form as: Nat Protoc. 2021 Sep 10;16(10):4766–4798. doi: 10.1038/s41596-021-00596-0

Table 5.

Files output by QC functions and their descriptions in Procedure 2, Steps 5 and 8 and Procedure 3, Step 4.

QC function	Output file names	Description
plot_reads_qc	[SCREEN]_raw_reads_histogram	Histograms of log-scaled read counts
plot_reads_qc	total_reads	Total read counts for all screens with hypothetical coverage appended
plot_reads_qc	reads_heatmap	Pearson correlation between log-scaled readcounts
plot_lfc_qc	[REPLICATE1]_vs_[REPLICATE2]_replicate_comparison	Scatterplot of LFCs between all replicates
plot_lfc_qc	replicate_pcc	Tab-delimited file of correlations for all replicates