TABLE 2.
List of genes with natural variations identified by ILs and cloned by IL-derived populations in rice.
| Gene | Locus | Recipient parent | Donor parent | Trait | References |
| NOG1 | LOC_Os01g54860 | Indica (cv. Guichao 2) | O. rufipogon (DXCWR) | Grain number | Huo et al., 2017 |
| OsGUX1 | LOC_Os01g65780 | Indica (cv. Zhenshan 97) | O. rufipogon (ACC10) | Chlorophyll content | Gao et al., 2020 |
| OsHMA4 | LOC_Os02g10290 | Japonica (cv. Lemont) | Indica (cv. Teqing) | Copper accumulation | Huang et al., 2016 |
| CAL1 | LOC_Os02g41904 | Japonica (cv. Chunjiang06) | Indica (cv. Tainan1) | Cadmium accumulation | Luo et al., 2018 |
| DTH3 | LOC_Os03g03070 | Indica (cv. Huajingxian74) | Multiple varieties | Heading date | Zhu et al., 2018 |
| BOC1 | LOC_Os03g12820 | Indica (cv. Teqing) | O. rufipogon (YJWCR) | Callus browning | Zhang et al., 2020b |
| TT1 | LOC_Os03g26970 | Japonica (cv. Wuyunjing) | O. glaberrima (CG14) | Thermotolerance | Li et al., 2015 |
| GNP1 | LOC_Os03g63970 | Japonica (cv. Lemont) | indica (cv. Teqing) | Grain number | Wu et al., 2016 |
| CTB4a | LOC_Os04g04330 | Japonica (cv. Towada) | japonica (cv. KMXBG) | Cold tolerance | Zhang et al., 2017 |
| An-1 | LOC_Os04g28280 | Indica (cv. Guangluai4) | O. rufipogon (W1943) | Awn length; Grain size | Luo et al., 2013 |
| LABA1/An-2 | LOC_Os04g43840 | Indica (cv. 93-11) | O. rufipogon (YJWCR) | Awn length | Hua et al., 2015 |
| GW5 | LOC_Os05g09520 | Japonica (cv. Asominori) | indica (cv. IR24) | Grain width | Weng et al., 2008 |
| OsEBS | LOC_Os05g51360 | Indica (cv. Guichao2) | O. rufipogon (DXCWR) | Plant biomass; Spikelet number | Dong et al., 2013 |
| Hd17 | LOC_Os06g05060 | Japonica (cv. Nipponbare) | Japonica (cv. Koshihikari) | Heading date | Matsubara et al., 2012 |
| GW6 | LOC_Os06g15620 | Indica (cv. Huajingxian74) | Japonica (cv. Nanyangzhan) | Grain width | Shi et al., 2020 |
| PROG1 | LOC_Os07g05900 | Indica (cv. Teqing) | O. rufipogon (YJWCR) | Prostrate growth | Tan et al., 2008 |
| OsHMA3 | LOC_Os07g12900 | Indica (cv. Huajingxian74) | Indica (cv. BG367) | Cadmium accumulation | Sui et al., 2019 |
| COS1/FZP | LOC_Os07g47330 | Japonica (cv. C418) | O. rufipogon (DXCWR) | Inflorescence branching | Huang et al., 2018 |
| Hd18 | LOC_Os08g04780 | Japonica (cv. Koshihikari) | japonica (cv. Hayamasari) | Heading date | Shibaya et al., 2016 |
| TIG1 | LOC_Os08g33530 | Indica (cv. 93-11) | O. rufipogon (W2014) | Tiller angle | Zhang et al., 2019d |
| GAD1 | LOC_Os08g37890 | Indica (cv. NA93-11) | O. rufipogon (W2014) | Awn length; Grain size | Jin et al., 2016 |
| OsSPL16/GW8 | LOC_Os08g41940 | Indica (cv. Huajingxian74) | indica (Basmati385) | Grain width | Wang S. et al., 2012 |
| GS9 | LOC_Os09g27590 | Japonica (cv. Nipponbare) | Qingluzan11 | Grain size | Zhao et al., 2018 |
| DTE9/OsMADS8 | LOC_Os09g32948 | Japonica (cv. Hwayeong) | O. rufipogon (W1944) | Hybrid weakness | Kim et al., 2021 |
| TAC1 | LOC_Os09g35980 | Indica (cv. IR24) | japonica (cv. Asominori) | Tiller angle | Yu et al., 2007 |
| OsGluA2 | LOC_Os10g26060 | Japonica (cv. Sasanishiki) | Indica (cv. Habataki) | Grain protein content | Yang et al., 2019 |
| OsLTPL159 | LOC_Os10g36160 | Indica (cv. Guichao2) | O. rufipogon (DXCWR) | Cold tolerance | Zhao et al., 2020 |
| GL10/OsMADS56 | LOC_Os10g39130 | Indica (cv. Huajingxian74) | Japonica (cv. Lemont) | Grain length | Zhan et al., 2022 |
| NRT1.1B | LOC_Os10g40600 | Japonica (cv. Nipponbare) | Indica (cv. IR24) | Nitrogen-use efficiency | Hu et al., 2015 |
| OsGH3.13 | LOC_Os11g32520 | Indica (cv. Zhenshan 97) | Japonica (cv. Nipponbare) | Grain length | Wang et al., 2021 |
| TOND1 | LOC_Os12g43440 | Indica (cv. Teqing) | O. rufipogon (YJWCR) | Tolerance to nitrogen deficiency | Zhang et al., 2015 |
DXCWR, Dongxiang common wild rice; YJWCR, Yuanjiang common wild rice; KMXBG, Kunmingxiaobaigu.